Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AFG3L1P-217ENST00000557444 2447 ntBASIC31.7■■■□□ 2.67
CCDC88BA6NC98 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CCDC88BA6NC98 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
CCDC88BA6NC98 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CCDC88BA6NC98 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC31.7■■■□□ 2.67
CCDC88BA6NC98 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CCDC88BA6NC98 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CCDC88BA6NC98 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
CCDC88BA6NC98 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
CCDC88BA6NC98 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC31.7■■■□□ 2.66
CCDC88BA6NC98 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.66
CCDC88BA6NC98 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC31.7■■■□□ 2.66
CCDC88BA6NC98 AL356488.2-201ENST00000602755 427 ntBASIC31.7■■■□□ 2.66
CCDC88BA6NC98 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC31.7■■■□□ 2.66
CCDC88BA6NC98 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
CCDC88BA6NC98 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC31.7■■■□□ 2.66
CCDC88BA6NC98 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
CCDC88BA6NC98 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC31.7■■■□□ 2.66
CCDC88BA6NC98 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
CCDC88BA6NC98 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 AL356309.3-201ENST00000624132 1934 ntBASIC31.69■■■□□ 2.66
CCDC88BA6NC98 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 FAM220CP-201ENST00000395253 831 ntBASIC31.69■■■□□ 2.66
CCDC88BA6NC98 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 RAB17-203ENST00000409576 466 ntTSL 3 BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 AC005104.2-201ENST00000427818 678 ntBASIC31.69■■■□□ 2.66
CCDC88BA6NC98 Z83851.2-201ENST00000609564 659 ntBASIC31.69■■■□□ 2.66
CCDC88BA6NC98 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
CCDC88BA6NC98 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 MED15P5-201ENST00000423150 992 ntBASIC31.68■■■□□ 2.66
CCDC88BA6NC98 OR7E14P-202ENST00000530490 1290 ntBASIC31.68■■■□□ 2.66
CCDC88BA6NC98 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 USP39-202ENST00000409025 1946 ntTSL 5 BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
CCDC88BA6NC98 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 CTNS-203ENST00000399306 803 ntTSL 3 BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 AC092910.1-201ENST00000482027 1129 ntBASIC31.67■■■□□ 2.66
CCDC88BA6NC98 RNA5SP415-201ENST00000517246 115 ntBASIC31.67■■■□□ 2.66
CCDC88BA6NC98 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC31.67■■■□□ 2.66
CCDC88BA6NC98 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 AC027601.4-201ENST00000611259 610 ntBASIC31.66■■■□□ 2.66
CCDC88BA6NC98 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC31.66■■■□□ 2.66
CCDC88BA6NC98 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 CENPM-204ENST00000402420 688 ntTSL 5 BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC31.65■■■□□ 2.66
CCDC88BA6NC98 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC31.64■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms