Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 LINC01126-201ENST00000623515 1646 ntBASIC19.18■□□□□ 0.66
USP3Q9Y6I4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 AL390719.2-201ENST00000606993 987 ntBASIC19.18■□□□□ 0.66
USP3Q9Y6I4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.18■□□□□ 0.66
USP3Q9Y6I4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP3Q9Y6I4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 AC113404.2-201ENST00000507884 177 ntBASIC19.17■□□□□ 0.66
USP3Q9Y6I4 KRT8P26-201ENST00000534154 1276 ntBASIC19.17■□□□□ 0.66
USP3Q9Y6I4 AC008687.5-201ENST00000593746 558 ntBASIC19.17■□□□□ 0.66
USP3Q9Y6I4 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 AC016734.2-201ENST00000624325 1377 ntBASIC19.17■□□□□ 0.66
USP3Q9Y6I4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
USP3Q9Y6I4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 BICD1-207ENST00000551848 1962 ntBASIC19.16■□□□□ 0.66
USP3Q9Y6I4 Z83836.1-201ENST00000624605 1642 ntBASIC19.16■□□□□ 0.66
USP3Q9Y6I4 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 GPR32P1-201ENST00000601788 811 ntBASIC19.16■□□□□ 0.66
USP3Q9Y6I4 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms