Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
ZC3H4Q9UPT8 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 COX5A-206ENST00000568783 571 ntTSL 3 BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
ZC3H4Q9UPT8 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 MIR770-201ENST00000390219 98 ntBASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 SYS1-203ENST00000414310 795 ntTSL 3 BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 COX20P2-201ENST00000452636 358 ntBASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 CFL1-202ENST00000524553 860 ntTSL 2 BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC22.16■■□□□ 1.14
ZC3H4Q9UPT8 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 DET1-207ENST00000564406 2315 ntTSL 2 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 CENPM-204ENST00000402420 688 ntTSL 5 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 HLA-J-203ENST00000494367 1087 ntBASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC22.15■■□□□ 1.14
ZC3H4Q9UPT8 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 AP002414.3-201ENST00000589352 1468 ntBASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 FUOM-202ENST00000368551 628 ntTSL 3 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 WBP2-203ENST00000433525 928 ntTSL 2 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 SPCS2P1-201ENST00000561636 679 ntBASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 AP002472.1-201ENST00000577490 586 ntBASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 AC064836.3-201ENST00000607928 673 ntBASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC22.14■■□□□ 1.14
ZC3H4Q9UPT8 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
ZC3H4Q9UPT8 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
ZC3H4Q9UPT8 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC22.14■■□□□ 1.13
ZC3H4Q9UPT8 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC22.14■■□□□ 1.13
ZC3H4Q9UPT8 AC002310.6-201ENST00000624451 1377 ntBASIC22.14■■□□□ 1.13
ZC3H4Q9UPT8 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC22.14■■□□□ 1.13
ZC3H4Q9UPT8 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC22.14■■□□□ 1.13
ZC3H4Q9UPT8 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
ZC3H4Q9UPT8 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ZC3H4Q9UPT8 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC22.13■■□□□ 1.13
ZC3H4Q9UPT8 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
ZC3H4Q9UPT8 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ZC3H4Q9UPT8 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
ZC3H4Q9UPT8 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ZC3H4Q9UPT8 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC22.13■■□□□ 1.13
ZC3H4Q9UPT8 MTDHP4-201ENST00000600287 670 ntBASIC22.13■■□□□ 1.13
ZC3H4Q9UPT8 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC22.13■■□□□ 1.13
ZC3H4Q9UPT8 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms