Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL390719.2-201ENST00000606993 987 ntBASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 IRX1P1-201ENST00000438849 1838 ntBASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 AC006333.2-201ENST00000607957 2099 ntBASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 IGHV3-41-201ENST00000613121 348 ntBASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 AC120498.9-201ENST00000339021 3867 ntBASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TM9SF3Q9HD45 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 MIR3180-4-201ENST00000582223 153 ntBASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TM9SF3Q9HD45 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 AC104819.1-201ENST00000504587 486 ntBASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 KRT18P31-201ENST00000506277 1292 ntBASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 LINC01711-201ENST00000598340 967 ntBASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 AL031008.1-201ENST00000619963 541 ntBASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 AL138781.2-201ENST00000617896 1843 ntBASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TM9SF3Q9HD45 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms