Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 KRT8P50-201ENST00000562022 1438 ntBASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 TPM4P1-201ENST00000436100 807 ntBASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 AP003733.1-201ENST00000491725 852 ntBASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 AL121894.2-201ENST00000602977 491 ntBASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 AL691432.3-201ENST00000621860 400 ntBASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 AL138781.2-201ENST00000617896 1843 ntBASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAIPQ9BWF2 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 Z83836.1-201ENST00000624605 1642 ntBASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 TPSP2-201ENST00000561760 610 ntBASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 AC090616.6-201ENST00000582640 721 ntBASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAIPQ9BWF2 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 IGHGP-201ENST00000390555 1178 ntBASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 AC083906.6-201ENST00000641366 219 ntBASIC20.08■□□□□ 0.81
TRAIPQ9BWF2 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRAIPQ9BWF2 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TRAIPQ9BWF2 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRAIPQ9BWF2 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TRAIPQ9BWF2 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.8
TRAIPQ9BWF2 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms