Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 AC004980.1-204ENST00000429707 299 ntBASIC16.06■□□□□ 0.16
NKX3-1Q99801 RPS2P4-201ENST00000476944 856 ntBASIC16.06■□□□□ 0.16
NKX3-1Q99801 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 AC124016.1-201ENST00000609552 612 ntBASIC16.06■□□□□ 0.16
NKX3-1Q99801 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 RCC2P3-201ENST00000418112 1537 ntBASIC16.05■□□□□ 0.16
NKX3-1Q99801 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 KRT16P5-201ENST00000455284 522 ntBASIC16.05■□□□□ 0.16
NKX3-1Q99801 AC091390.4-202ENST00000476426 537 ntBASIC16.05■□□□□ 0.16
NKX3-1Q99801 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.05■□□□□ 0.16
NKX3-1Q99801 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX3-1Q99801 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
NKX3-1Q99801 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 AL162741.1-201ENST00000565563 1558 ntBASIC16.04■□□□□ 0.16
NKX3-1Q99801 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
NKX3-1Q99801 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX3-1Q99801 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 LINC00896-202ENST00000609602 2128 ntBASIC16.03■□□□□ 0.16
NKX3-1Q99801 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX3-1Q99801 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX3-1Q99801 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms