Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR3917-201ENST00000580971 93 ntBASIC14.23□□□□□ -0.13
CCDC140Q96MF4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 AC007613.1-201ENST00000572811 2597 ntBASIC14.23□□□□□ -0.13
CCDC140Q96MF4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 COX11P1-201ENST00000489116 835 ntBASIC14.22□□□□□ -0.13
CCDC140Q96MF4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 PPOX-219ENST00000544598 813 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC140Q96MF4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.21□□□□□ -0.13
CCDC140Q96MF4 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 AL441883.1-201ENST00000566170 1045 ntBASIC14.21□□□□□ -0.13
CCDC140Q96MF4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC140Q96MF4 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC140Q96MF4 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC140Q96MF4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC140Q96MF4 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC140Q96MF4 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC140Q96MF4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC14.21□□□□□ -0.14
CCDC140Q96MF4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
CCDC140Q96MF4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms