Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1AQ8TE12 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 NUS1P2-201ENST00000417358 873 ntBASIC17.88■□□□□ 0.45
LMX1AQ8TE12 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.88■□□□□ 0.45
LMX1AQ8TE12 AC079781.3-201ENST00000449110 356 ntBASIC17.88■□□□□ 0.45
LMX1AQ8TE12 AC009078.2-202ENST00000463353 338 ntBASIC17.88■□□□□ 0.45
LMX1AQ8TE12 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 AP005901.3-202ENST00000581653 237 ntBASIC17.88■□□□□ 0.45
LMX1AQ8TE12 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 AC116562.4-201ENST00000641316 2276 ntBASIC17.88■□□□□ 0.45
LMX1AQ8TE12 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.88■□□□□ 0.45
LMX1AQ8TE12 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 MYLKP1-201ENST00000509077 1580 ntBASIC17.87■□□□□ 0.45
LMX1AQ8TE12 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 AL353801.3-201ENST00000609898 542 ntBASIC17.87■□□□□ 0.45
LMX1AQ8TE12 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.87■□□□□ 0.45
LMX1AQ8TE12 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 AL160237.2-201ENST00000556165 472 ntBASIC17.86■□□□□ 0.45
LMX1AQ8TE12 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 AC008687.5-201ENST00000593746 558 ntBASIC17.86■□□□□ 0.45
LMX1AQ8TE12 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 AC112777.1-201ENST00000540175 1423 ntBASIC17.86■□□□□ 0.45
LMX1AQ8TE12 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1AQ8TE12 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms