Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NKX2-3Q8TAU0 ESPNP-201ENST00000270691 2015 ntBASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 LINC01126-201ENST00000623515 1646 ntBASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 AC009078.2-202ENST00000463353 338 ntBASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-3Q8TAU0 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 NEFHP1-201ENST00000412845 2629 ntBASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 AL160237.2-201ENST00000556165 472 ntBASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 IFNL4P1-201ENST00000607083 540 ntBASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 AC112777.1-201ENST00000540175 1423 ntBASIC21.72■■□□□ 1.07
NKX2-3Q8TAU0 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-3Q8TAU0 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.7■■□□□ 1.07
NKX2-3Q8TAU0 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
NKX2-3Q8TAU0 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 LINC01711-201ENST00000598340 967 ntBASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 AL024508.2-201ENST00000607749 1894 ntBASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NKX2-3Q8TAU0 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-3Q8TAU0 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
NKX2-3Q8TAU0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-3Q8TAU0 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-3Q8TAU0 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-3Q8TAU0 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-3Q8TAU0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.69■■□□□ 1.06
NKX2-3Q8TAU0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms