Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 AL138831.2-201ENST00000606564 490 ntBASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 AL078644.1-201ENST00000609881 752 ntBASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 AC092865.6-201ENST00000642101 219 ntBASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMC1BQ8NDV3 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 AC015922.1-201ENST00000421102 1152 ntBASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 CCND1-203ENST00000536559 553 ntTSL 3 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 RNF34-208ENST00000555076 593 ntTSL 3 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 METTL23-205ENST00000588302 925 ntTSL 5 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMC1BQ8NDV3 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 KLK8-202ENST00000320838 456 ntTSL 5 BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
SMC1BQ8NDV3 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SMC1BQ8NDV3 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC21.7■■□□□ 1.07
SMC1BQ8NDV3 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 AC007274.1-201ENST00000439805 662 ntBASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 AC068472.1-201ENST00000474589 881 ntBASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 AC004449.1-201ENST00000564240 433 ntBASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 AP000867.4-201ENST00000641616 219 ntBASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 AC026310.3-201ENST00000625186 2373 ntBASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
SMC1BQ8NDV3 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 382.4 ms