Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.33■□□□□ 0.68
SCUBE3Q8IX30 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SCUBE3Q8IX30 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCUBE3Q8IX30 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.33■□□□□ 0.68
SCUBE3Q8IX30 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.33■□□□□ 0.68
SCUBE3Q8IX30 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.33■□□□□ 0.68
SCUBE3Q8IX30 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 AC092597.1-201ENST00000487352 616 ntBASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 AC009065.1-201ENST00000564055 1225 ntBASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 AC079602.3-201ENST00000623931 403 ntBASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 NEFHP1-201ENST00000412845 2629 ntBASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.32■□□□□ 0.68
SCUBE3Q8IX30 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.31■□□□□ 0.68
SCUBE3Q8IX30 ESPNP-201ENST00000270691 2015 ntBASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 PVRIG2P-201ENST00000435460 978 ntBASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 AC112907.2-201ENST00000448639 330 ntBASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCUBE3Q8IX30 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCUBE3Q8IX30 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms