Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 PTMS-202ENST00000389462 773 ntTSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 AC073621.1-201ENST00000392730 636 ntBASIC13.1□□□□□ -0.31
COL7A1Q02388 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.1□□□□□ -0.31
COL7A1Q02388 WDR53-203ENST00000429115 683 ntTSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 BCRP1-201ENST00000444246 691 ntBASIC13.1□□□□□ -0.31
COL7A1Q02388 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC13.1□□□□□ -0.31
COL7A1Q02388 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC13.1□□□□□ -0.31
COL7A1Q02388 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 IRX1P1-201ENST00000438849 1838 ntBASIC13.1□□□□□ -0.31
COL7A1Q02388 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC13.1□□□□□ -0.31
COL7A1Q02388 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
COL7A1Q02388 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL7A1Q02388 ELL2P1-201ENST00000413990 1906 ntBASIC13.1□□□□□ -0.31
COL7A1Q02388 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
COL7A1Q02388 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
COL7A1Q02388 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.09□□□□□ -0.31
COL7A1Q02388 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 KRT18P41-201ENST00000518924 1277 ntBASIC13.09□□□□□ -0.31
COL7A1Q02388 AC190387.1-201ENST00000551683 408 ntBASIC13.09□□□□□ -0.31
COL7A1Q02388 AC105339.3-201ENST00000560043 636 ntBASIC13.09□□□□□ -0.31
COL7A1Q02388 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
COL7A1Q02388 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC13.09□□□□□ -0.31
COL7A1Q02388 AC093028.1-201ENST00000622998 982 ntBASIC13.09□□□□□ -0.31
COL7A1Q02388 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC13.09□□□□□ -0.31
COL7A1Q02388 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 GOLGA6L17P-202ENST00000614358 1398 ntBASIC13.09□□□□□ -0.31
COL7A1Q02388 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
COL7A1Q02388 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.09□□□□□ -0.31
COL7A1Q02388 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 CENPM-204ENST00000402420 688 ntTSL 5 BASIC13.09□□□□□ -0.31
COL7A1Q02388 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC13.09□□□□□ -0.31
COL7A1Q02388 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.09□□□□□ -0.31
COL7A1Q02388 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
COL7A1Q02388 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
COL7A1Q02388 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC13.09□□□□□ -0.31
COL7A1Q02388 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
COL7A1Q02388 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC13.09□□□□□ -0.31
COL7A1Q02388 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC13.09□□□□□ -0.31
COL7A1Q02388 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC13.09□□□□□ -0.31
COL7A1Q02388 Z92544.3-201ENST00000624747 417 ntBASIC13.09□□□□□ -0.31
COL7A1Q02388 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC13.09□□□□□ -0.31
COL7A1Q02388 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL7A1Q02388 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
COL7A1Q02388 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC13.08□□□□□ -0.31
COL7A1Q02388 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.31
COL7A1Q02388 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.31
COL7A1Q02388 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
COL7A1Q02388 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC13.08□□□□□ -0.32
COL7A1Q02388 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL7A1Q02388 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC13.08□□□□□ -0.32
COL7A1Q02388 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
COL7A1Q02388 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC13.08□□□□□ -0.32
COL7A1Q02388 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.08□□□□□ -0.32
COL7A1Q02388 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.08□□□□□ -0.32
COL7A1Q02388 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
COL7A1Q02388 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC13.08□□□□□ -0.32
COL7A1Q02388 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms