Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.05■□□□□ 0.48
PKNOX1P55347 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.05■□□□□ 0.48
PKNOX1P55347 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
PKNOX1P55347 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
PKNOX1P55347 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.04■□□□□ 0.48
PKNOX1P55347 AC096733.2-201ENST00000609937 1394 ntBASIC18.04■□□□□ 0.48
PKNOX1P55347 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.04■□□□□ 0.48
PKNOX1P55347 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.04■□□□□ 0.48
PKNOX1P55347 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 FAM201B-201ENST00000458407 597 ntBASIC18.04■□□□□ 0.48
PKNOX1P55347 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.04■□□□□ 0.48
PKNOX1P55347 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.04■□□□□ 0.48
PKNOX1P55347 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.04■□□□□ 0.48
PKNOX1P55347 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.04■□□□□ 0.48
PKNOX1P55347 DGCR10-201ENST00000609839 495 ntBASIC18.04■□□□□ 0.48
PKNOX1P55347 AC008556.1-201ENST00000610908 2040 ntBASIC18.04■□□□□ 0.48
PKNOX1P55347 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.04■□□□□ 0.48
PKNOX1P55347 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.04■□□□□ 0.48
PKNOX1P55347 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.04■□□□□ 0.48
PKNOX1P55347 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
PKNOX1P55347 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.04■□□□□ 0.48
PKNOX1P55347 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PKNOX1P55347 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
PKNOX1P55347 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
PKNOX1P55347 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.03■□□□□ 0.48
PKNOX1P55347 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
PKNOX1P55347 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.03■□□□□ 0.48
PKNOX1P55347 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
PKNOX1P55347 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.03■□□□□ 0.48
PKNOX1P55347 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.03■□□□□ 0.48
PKNOX1P55347 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.03■□□□□ 0.48
PKNOX1P55347 AP000593.1-201ENST00000393668 712 ntBASIC18.03■□□□□ 0.48
PKNOX1P55347 FAM197Y1-201ENST00000421178 764 ntBASIC18.03■□□□□ 0.48
PKNOX1P55347 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.03■□□□□ 0.48
PKNOX1P55347 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
PKNOX1P55347 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.03■□□□□ 0.48
PKNOX1P55347 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.03■□□□□ 0.48
PKNOX1P55347 CD177P1-201ENST00000606252 935 ntBASIC18.03■□□□□ 0.48
PKNOX1P55347 LINC00896-202ENST00000609602 2128 ntBASIC18.03■□□□□ 0.48
PKNOX1P55347 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.03■□□□□ 0.48
PKNOX1P55347 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.03■□□□□ 0.48
PKNOX1P55347 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 AC134043.2-201ENST00000624206 2238 ntBASIC18.03■□□□□ 0.48
PKNOX1P55347 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.03■□□□□ 0.48
PKNOX1P55347 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
PKNOX1P55347 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
PKNOX1P55347 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
PKNOX1P55347 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.02■□□□□ 0.48
PKNOX1P55347 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.02■□□□□ 0.48
PKNOX1P55347 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PKNOX1P55347 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.02■□□□□ 0.48
PKNOX1P55347 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.02■□□□□ 0.48
PKNOX1P55347 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
PKNOX1P55347 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.02■□□□□ 0.48
PKNOX1P55347 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
PKNOX1P55347 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PKNOX1P55347 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.02■□□□□ 0.48
PKNOX1P55347 MIR564-202ENST00000385049 94 ntBASIC18.02■□□□□ 0.48
PKNOX1P55347 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PKNOX1P55347 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.02■□□□□ 0.48
PKNOX1P55347 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
PKNOX1P55347 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.02■□□□□ 0.48
PKNOX1P55347 AC008622.2-201ENST00000617006 1229 ntBASIC18.02■□□□□ 0.48
PKNOX1P55347 ITM2C-210ENST00000620962 501 ntBASIC18.02■□□□□ 0.48
PKNOX1P55347 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms