Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CKS2P33552 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CKS2P33552 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CKS2P33552 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CKS2P33552 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CKS2P33552 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.54□□□□□ -0.24
CKS2P33552 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
CKS2P33552 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CKS2P33552 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.54□□□□□ -0.24
CKS2P33552 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC13.54□□□□□ -0.24
CKS2P33552 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC13.54□□□□□ -0.24
CKS2P33552 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC13.54□□□□□ -0.24
CKS2P33552 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CKS2P33552 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CKS2P33552 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC13.54□□□□□ -0.24
CKS2P33552 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC13.54□□□□□ -0.24
CKS2P33552 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC13.53□□□□□ -0.24
CKS2P33552 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CKS2P33552 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CKS2P33552 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC13.53□□□□□ -0.24
CKS2P33552 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC13.53□□□□□ -0.24
CKS2P33552 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 AC073210.2-201ENST00000430369 194 ntBASIC13.53□□□□□ -0.24
CKS2P33552 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC13.53□□□□□ -0.24
CKS2P33552 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC13.53□□□□□ -0.24
CKS2P33552 BID-214ENST00000617586 542 ntTSL 5 BASIC13.53□□□□□ -0.24
CKS2P33552 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CKS2P33552 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC13.53□□□□□ -0.24
CKS2P33552 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.53□□□□□ -0.24
CKS2P33552 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
CKS2P33552 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 NFYC-AS1-201ENST00000606277 1687 ntBASIC13.53□□□□□ -0.24
CKS2P33552 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CKS2P33552 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
CKS2P33552 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CKS2P33552 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
CKS2P33552 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CKS2P33552 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
CKS2P33552 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
CKS2P33552 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CKS2P33552 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC13.52□□□□□ -0.24
CKS2P33552 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CKS2P33552 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13.52□□□□□ -0.24
CKS2P33552 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CKS2P33552 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CKS2P33552 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC13.52□□□□□ -0.25
CKS2P33552 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
CKS2P33552 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 CNN2P6-201ENST00000439038 900 ntBASIC13.52□□□□□ -0.25
CKS2P33552 DBI-210ENST00000542275 757 ntTSL 5 BASIC13.52□□□□□ -0.25
CKS2P33552 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC13.52□□□□□ -0.25
CKS2P33552 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC13.52□□□□□ -0.25
CKS2P33552 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC13.52□□□□□ -0.25
CKS2P33552 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC13.52□□□□□ -0.25
CKS2P33552 RAP2CP1-201ENST00000605103 478 ntBASIC13.52□□□□□ -0.25
CKS2P33552 AL139246.5-201ENST00000606645 996 ntBASIC13.52□□□□□ -0.25
CKS2P33552 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 KATNBL1P6-202ENST00000562413 1466 ntBASIC13.52□□□□□ -0.25
CKS2P33552 RCC2P6-201ENST00000526625 1557 ntBASIC13.52□□□□□ -0.25
CKS2P33552 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
CKS2P33552 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.52□□□□□ -0.25
CKS2P33552 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC13.52□□□□□ -0.25
CKS2P33552 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC13.52□□□□□ -0.25
CKS2P33552 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CKS2P33552 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
CKS2P33552 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
CKS2P33552 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms