Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
COL6A3P12111 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL6A3P12111 COX11-202ENST00000571584 1108 ntTSL 2 BASIC19.08■□□□□ 0.65
COL6A3P12111 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC19.08■□□□□ 0.65
COL6A3P12111 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.08■□□□□ 0.65
COL6A3P12111 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.08■□□□□ 0.65
COL6A3P12111 AL033527.4-201ENST00000641026 673 ntBASIC19.08■□□□□ 0.65
COL6A3P12111 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL6A3P12111 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
COL6A3P12111 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.08■□□□□ 0.65
COL6A3P12111 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.08■□□□□ 0.65
COL6A3P12111 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL6A3P12111 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL6A3P12111 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC19.08■□□□□ 0.64
COL6A3P12111 COX5BP8-201ENST00000416911 349 ntBASIC19.08■□□□□ 0.64
COL6A3P12111 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL6A3P12111 VPS29-207ENST00000549970 818 ntTSL 3 BASIC19.08■□□□□ 0.64
COL6A3P12111 COQ6-210ENST00000554920 649 ntTSL 3 BASIC19.08■□□□□ 0.64
COL6A3P12111 LINC02560-201ENST00000596379 459 ntBASIC19.08■□□□□ 0.64
COL6A3P12111 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A3P12111 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC19.07■□□□□ 0.64
COL6A3P12111 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.07■□□□□ 0.64
COL6A3P12111 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A3P12111 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A3P12111 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A3P12111 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A3P12111 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A3P12111 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
COL6A3P12111 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A3P12111 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.07■□□□□ 0.64
COL6A3P12111 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A3P12111 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.07■□□□□ 0.64
COL6A3P12111 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A3P12111 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.07■□□□□ 0.64
COL6A3P12111 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.07■□□□□ 0.64
COL6A3P12111 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A3P12111 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.07■□□□□ 0.64
COL6A3P12111 AC004835.2-201ENST00000603762 682 ntBASIC19.07■□□□□ 0.64
COL6A3P12111 SPTSSB-204ENST00000617024 1292 ntBASIC19.07■□□□□ 0.64
COL6A3P12111 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.07■□□□□ 0.64
COL6A3P12111 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.06■□□□□ 0.64
COL6A3P12111 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL6A3P12111 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
COL6A3P12111 HNRNPA1P40-201ENST00000426371 1278 ntBASIC19.06■□□□□ 0.64
COL6A3P12111 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.06■□□□□ 0.64
COL6A3P12111 AC027307.3-201ENST00000594262 1100 ntBASIC19.06■□□□□ 0.64
COL6A3P12111 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL6A3P12111 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL6A3P12111 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL6A3P12111 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL6A3P12111 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.06■□□□□ 0.64
COL6A3P12111 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC19.06■□□□□ 0.64
COL6A3P12111 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.06■□□□□ 0.64
COL6A3P12111 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.06■□□□□ 0.64
COL6A3P12111 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL6A3P12111 EP400NL-214ENST00000641289 2402 ntBASIC19.06■□□□□ 0.64
COL6A3P12111 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
COL6A3P12111 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC19.05■□□□□ 0.64
COL6A3P12111 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
COL6A3P12111 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 AC108073.2-201ENST00000464002 357 ntBASIC19.05■□□□□ 0.64
COL6A3P12111 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 AC034236.2-201ENST00000606662 1610 ntBASIC19.05■□□□□ 0.64
COL6A3P12111 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
COL6A3P12111 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
COL6A3P12111 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.05■□□□□ 0.64
COL6A3P12111 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
COL6A3P12111 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A3P12111 ACTG1P14-201ENST00000446382 1122 ntBASIC19.05■□□□□ 0.64
COL6A3P12111 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.05■□□□□ 0.64
COL6A3P12111 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
COL6A3P12111 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
COL6A3P12111 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.05■□□□□ 0.64
COL6A3P12111 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
COL6A3P12111 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
COL6A3P12111 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.04■□□□□ 0.64
COL6A3P12111 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL6A3P12111 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL6A3P12111 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.04■□□□□ 0.64
COL6A3P12111 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.04■□□□□ 0.64
COL6A3P12111 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC19.04■□□□□ 0.64
COL6A3P12111 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms