Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.93■□□□□ 0.46
PCNAP12004 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCNAP12004 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
PCNAP12004 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 AC112777.1-201ENST00000540175 1423 ntBASIC17.92■□□□□ 0.46
PCNAP12004 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
PCNAP12004 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PCNAP12004 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.92■□□□□ 0.46
PCNAP12004 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 TSPY15P-201ENST00000457163 923 ntBASIC17.92■□□□□ 0.46
PCNAP12004 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PCNAP12004 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.92■□□□□ 0.46
PCNAP12004 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
PCNAP12004 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCNAP12004 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
PCNAP12004 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.92■□□□□ 0.46
PCNAP12004 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.92■□□□□ 0.46
PCNAP12004 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
PCNAP12004 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PCNAP12004 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
PCNAP12004 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
PCNAP12004 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.91■□□□□ 0.46
PCNAP12004 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PCNAP12004 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
PCNAP12004 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.91■□□□□ 0.46
PCNAP12004 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.91■□□□□ 0.46
PCNAP12004 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.91■□□□□ 0.46
PCNAP12004 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.91■□□□□ 0.46
PCNAP12004 SLC25A1P2-201ENST00000430693 912 ntBASIC17.91■□□□□ 0.46
PCNAP12004 CCR12P-201ENST00000446203 998 ntBASIC17.91■□□□□ 0.46
PCNAP12004 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.91■□□□□ 0.46
PCNAP12004 C2orf69P3-201ENST00000565542 1120 ntBASIC17.91■□□□□ 0.46
PCNAP12004 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.91■□□□□ 0.46
PCNAP12004 NOC2LP2-201ENST00000407594 1944 ntBASIC17.91■□□□□ 0.46
PCNAP12004 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.91■□□□□ 0.46
PCNAP12004 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
PCNAP12004 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.91■□□□□ 0.46
PCNAP12004 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
PCNAP12004 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCNAP12004 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.91■□□□□ 0.46
PCNAP12004 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.9■□□□□ 0.46
PCNAP12004 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PCNAP12004 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
PCNAP12004 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.9■□□□□ 0.46
PCNAP12004 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.9■□□□□ 0.46
PCNAP12004 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.9■□□□□ 0.46
PCNAP12004 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PCNAP12004 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 TSPY17P-201ENST00000450329 467 ntBASIC17.9■□□□□ 0.46
PCNAP12004 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.9■□□□□ 0.46
PCNAP12004 AP003041.3-201ENST00000527151 707 ntBASIC17.9■□□□□ 0.46
PCNAP12004 MIR4674-201ENST00000582457 87 ntBASIC17.9■□□□□ 0.46
PCNAP12004 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.9■□□□□ 0.46
PCNAP12004 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 AC066615.1-201ENST00000640911 628 ntBASIC17.9■□□□□ 0.46
PCNAP12004 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.9■□□□□ 0.46
PCNAP12004 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCNAP12004 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms