Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A2P08572 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A2P08572 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A2P08572 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A2P08572 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
COL4A2P08572 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A2P08572 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
COL4A2P08572 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.47■□□□□ 0.55
COL4A2P08572 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL4A2P08572 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A2P08572 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A2P08572 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A2P08572 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A2P08572 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A2P08572 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A2P08572 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A2P08572 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
COL4A2P08572 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
COL4A2P08572 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A2P08572 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A2P08572 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A2P08572 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A2P08572 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A2P08572 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A2P08572 AC104109.2-201ENST00000602919 1418 ntBASIC18.46■□□□□ 0.55
COL4A2P08572 ZNF259P1-201ENST00000407656 1365 ntBASIC18.46■□□□□ 0.55
COL4A2P08572 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A2P08572 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A2P08572 FAM220CP-201ENST00000395253 831 ntBASIC18.46■□□□□ 0.55
COL4A2P08572 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A2P08572 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.46■□□□□ 0.55
COL4A2P08572 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.46■□□□□ 0.55
COL4A2P08572 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A2P08572 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A2P08572 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A2P08572 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A2P08572 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A2P08572 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A2P08572 LINC01126-201ENST00000623515 1646 ntBASIC18.45■□□□□ 0.54
COL4A2P08572 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A2P08572 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A2P08572 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A2P08572 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A2P08572 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A2P08572 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A2P08572 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A2P08572 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A2P08572 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL4A2P08572 YBX2P1-201ENST00000394192 760 ntBASIC18.45■□□□□ 0.54
COL4A2P08572 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.45■□□□□ 0.54
COL4A2P08572 AL591424.1-201ENST00000442569 1213 ntBASIC18.45■□□□□ 0.54
COL4A2P08572 AC092910.1-201ENST00000482027 1129 ntBASIC18.45■□□□□ 0.54
COL4A2P08572 RNA5SP415-201ENST00000517246 115 ntBASIC18.45■□□□□ 0.54
COL4A2P08572 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A2P08572 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
COL4A2P08572 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.45■□□□□ 0.54
COL4A2P08572 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A2P08572 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.45■□□□□ 0.54
COL4A2P08572 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A2P08572 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.45■□□□□ 0.54
COL4A2P08572 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A2P08572 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.44■□□□□ 0.54
COL4A2P08572 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A2P08572 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A2P08572 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A2P08572 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A2P08572 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
COL4A2P08572 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
COL4A2P08572 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A2P08572 RPSAP43-201ENST00000402237 625 ntBASIC18.44■□□□□ 0.54
COL4A2P08572 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.44■□□□□ 0.54
COL4A2P08572 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.44■□□□□ 0.54
COL4A2P08572 AL356488.2-201ENST00000602755 427 ntBASIC18.44■□□□□ 0.54
COL4A2P08572 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
COL4A2P08572 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.44■□□□□ 0.54
COL4A2P08572 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL4A2P08572 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A2P08572 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.44■□□□□ 0.54
COL4A2P08572 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A2P08572 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A2P08572 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A2P08572 MYLKP1-201ENST00000509077 1580 ntBASIC18.44■□□□□ 0.54
COL4A2P08572 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.43■□□□□ 0.54
COL4A2P08572 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A2P08572 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
COL4A2P08572 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.43■□□□□ 0.54
COL4A2P08572 UPF3AP3-201ENST00000420996 769 ntBASIC18.43■□□□□ 0.54
COL4A2P08572 AC005104.2-201ENST00000427818 678 ntBASIC18.43■□□□□ 0.54
COL4A2P08572 KRT18P65-201ENST00000439811 1286 ntBASIC18.43■□□□□ 0.54
COL4A2P08572 MTDHP4-201ENST00000600287 670 ntBASIC18.43■□□□□ 0.54
COL4A2P08572 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
COL4A2P08572 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A2P08572 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A2P08572 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A2P08572 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A2P08572 AC099343.3-201ENST00000605834 2503 ntBASIC18.43■□□□□ 0.54
COL4A2P08572 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A2P08572 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
COL4A2P08572 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
COL4A2P08572 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms