Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RNF40O75150 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RNF40O75150 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RNF40O75150 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
RNF40O75150 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
RNF40O75150 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.82■□□□□ 0.76
RNF40O75150 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
RNF40O75150 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
RNF40O75150 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
RNF40O75150 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.82■□□□□ 0.76
RNF40O75150 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF40O75150 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF40O75150 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.82■□□□□ 0.76
RNF40O75150 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF40O75150 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
RNF40O75150 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
RNF40O75150 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.82■□□□□ 0.76
RNF40O75150 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF40O75150 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.82■□□□□ 0.76
RNF40O75150 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF40O75150 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF40O75150 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF40O75150 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF40O75150 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF40O75150 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
RNF40O75150 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
RNF40O75150 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.82■□□□□ 0.76
RNF40O75150 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
RNF40O75150 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF40O75150 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.82■□□□□ 0.76
RNF40O75150 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.82■□□□□ 0.76
RNF40O75150 AC096733.2-201ENST00000609937 1394 ntBASIC19.82■□□□□ 0.76
RNF40O75150 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.82■□□□□ 0.76
RNF40O75150 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.81■□□□□ 0.76
RNF40O75150 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.81■□□□□ 0.76
RNF40O75150 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.81■□□□□ 0.76
RNF40O75150 CCR12P-201ENST00000446203 998 ntBASIC19.81■□□□□ 0.76
RNF40O75150 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
RNF40O75150 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.81■□□□□ 0.76
RNF40O75150 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
RNF40O75150 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.81■□□□□ 0.76
RNF40O75150 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
RNF40O75150 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
RNF40O75150 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.81■□□□□ 0.76
RNF40O75150 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.81■□□□□ 0.76
RNF40O75150 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF40O75150 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.8■□□□□ 0.76
RNF40O75150 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.8■□□□□ 0.76
RNF40O75150 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
RNF40O75150 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.8■□□□□ 0.76
RNF40O75150 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.8■□□□□ 0.76
RNF40O75150 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.8■□□□□ 0.76
RNF40O75150 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.8■□□□□ 0.76
RNF40O75150 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.8■□□□□ 0.76
RNF40O75150 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.8■□□□□ 0.76
RNF40O75150 AC139887.4-201ENST00000607877 719 ntBASIC19.8■□□□□ 0.76
RNF40O75150 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.8■□□□□ 0.76
RNF40O75150 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.8■□□□□ 0.76
RNF40O75150 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 AC008764.6-201ENST00000595909 2069 ntBASIC19.8■□□□□ 0.76
RNF40O75150 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.8■□□□□ 0.76
RNF40O75150 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
RNF40O75150 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
RNF40O75150 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.8■□□□□ 0.76
RNF40O75150 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF40O75150 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
RNF40O75150 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF40O75150 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.79■□□□□ 0.76
RNF40O75150 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF40O75150 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms