Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 RNF126P1-202ENST00000569893 925 ntBASIC19.22■□□□□ 0.67
USP3Q9Y6I4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 AC011498.5-201ENST00000592027 486 ntBASIC19.22■□□□□ 0.67
USP3Q9Y6I4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 KRT18P48-201ENST00000434763 852 ntBASIC19.21■□□□□ 0.67
USP3Q9Y6I4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 RNF165-205ENST00000588679 2904 ntBASIC19.21■□□□□ 0.67
USP3Q9Y6I4 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP3Q9Y6I4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 AP003733.1-201ENST00000491725 852 ntBASIC19.2■□□□□ 0.66
USP3Q9Y6I4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP3Q9Y6I4 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 IGHGP-201ENST00000390555 1178 ntBASIC19.19■□□□□ 0.66
USP3Q9Y6I4 UPK3BP1-201ENST00000428678 509 ntBASIC19.19■□□□□ 0.66
USP3Q9Y6I4 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.19■□□□□ 0.66
USP3Q9Y6I4 AC005332.3-201ENST00000589904 676 ntBASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms