Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 KRT89P-201ENST00000620027 1478 ntBASIC19.66■□□□□ 0.74
SIX4Q9UIU6 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.66■□□□□ 0.74
SIX4Q9UIU6 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.66■□□□□ 0.74
SIX4Q9UIU6 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 KRT18P48-201ENST00000434763 852 ntBASIC19.65■□□□□ 0.74
SIX4Q9UIU6 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 AC011498.5-201ENST00000592027 486 ntBASIC19.65■□□□□ 0.74
SIX4Q9UIU6 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SIX4Q9UIU6 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SIX4Q9UIU6 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.64■□□□□ 0.74
SIX4Q9UIU6 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
SIX4Q9UIU6 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SIX4Q9UIU6 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SIX4Q9UIU6 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
SIX4Q9UIU6 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SIX4Q9UIU6 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 IGHGP-201ENST00000390555 1178 ntBASIC19.64■□□□□ 0.73
SIX4Q9UIU6 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 AP003733.1-201ENST00000491725 852 ntBASIC19.64■□□□□ 0.73
SIX4Q9UIU6 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 AC005332.3-201ENST00000589904 676 ntBASIC19.64■□□□□ 0.73
SIX4Q9UIU6 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.64■□□□□ 0.73
SIX4Q9UIU6 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 Z83836.1-201ENST00000624605 1642 ntBASIC19.63■□□□□ 0.73
SIX4Q9UIU6 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 GMCL1P1-201ENST00000463439 1581 ntBASIC19.63■□□□□ 0.73
SIX4Q9UIU6 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 AL390719.2-201ENST00000606993 987 ntBASIC19.63■□□□□ 0.73
SIX4Q9UIU6 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.63■□□□□ 0.73
SIX4Q9UIU6 AC090164.3-201ENST00000610780 2143 ntBASIC19.63■□□□□ 0.73
SIX4Q9UIU6 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.62■□□□□ 0.73
SIX4Q9UIU6 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms