Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.77■□□□□ 0.76
CNTN3Q9P232 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CNTN3Q9P232 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.77■□□□□ 0.76
CNTN3Q9P232 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.77■□□□□ 0.76
CNTN3Q9P232 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
CNTN3Q9P232 AP002414.4-201ENST00000589764 1148 ntBASIC19.77■□□□□ 0.76
CNTN3Q9P232 AC008687.5-201ENST00000593746 558 ntBASIC19.77■□□□□ 0.76
CNTN3Q9P232 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CNTN3Q9P232 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CNTN3Q9P232 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CNTN3Q9P232 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CNTN3Q9P232 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CNTN3Q9P232 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CNTN3Q9P232 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
CNTN3Q9P232 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CNTN3Q9P232 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CNTN3Q9P232 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CNTN3Q9P232 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CNTN3Q9P232 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CNTN3Q9P232 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CNTN3Q9P232 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CNTN3Q9P232 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.76■□□□□ 0.75
CNTN3Q9P232 AC113404.2-201ENST00000507884 177 ntBASIC19.76■□□□□ 0.75
CNTN3Q9P232 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.76■□□□□ 0.75
CNTN3Q9P232 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CNTN3Q9P232 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CNTN3Q9P232 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CNTN3Q9P232 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.76■□□□□ 0.75
CNTN3Q9P232 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
CNTN3Q9P232 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
CNTN3Q9P232 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 AL353692.3-201ENST00000407031 1396 ntBASIC19.75■□□□□ 0.75
CNTN3Q9P232 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 AC092329.2-201ENST00000598402 547 ntBASIC19.75■□□□□ 0.75
CNTN3Q9P232 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.75■□□□□ 0.75
CNTN3Q9P232 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CNTN3Q9P232 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 DRAXINP1-201ENST00000437611 948 ntBASIC19.74■□□□□ 0.75
CNTN3Q9P232 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 AC090616.6-201ENST00000582640 721 ntBASIC19.74■□□□□ 0.75
CNTN3Q9P232 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 AC005082.1-201ENST00000413042 2259 ntBASIC19.74■□□□□ 0.75
CNTN3Q9P232 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms