Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.57■□□□□ 0.4
CCDC88CQ9P219 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 AL023284.2-201ENST00000405850 579 ntBASIC17.57■□□□□ 0.4
CCDC88CQ9P219 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.57■□□□□ 0.4
CCDC88CQ9P219 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC88CQ9P219 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 AC126763.1-201ENST00000552015 2118 ntBASIC17.56■□□□□ 0.4
CCDC88CQ9P219 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC88CQ9P219 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 KRT18P56-201ENST00000507275 550 ntBASIC17.55■□□□□ 0.4
CCDC88CQ9P219 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 AL390961.4-201ENST00000623958 2535 ntBASIC17.55■□□□□ 0.4
CCDC88CQ9P219 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 AL499627.1-201ENST00000569373 2188 ntBASIC17.55■□□□□ 0.4
CCDC88CQ9P219 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 AC099343.3-201ENST00000605834 2503 ntBASIC17.55■□□□□ 0.4
CCDC88CQ9P219 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 AL391807.1-203ENST00000604392 2365 ntBASIC17.55■□□□□ 0.4
CCDC88CQ9P219 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.55■□□□□ 0.4
CCDC88CQ9P219 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC88CQ9P219 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 LINC01311-201ENST00000565162 1445 ntBASIC17.54■□□□□ 0.4
CCDC88CQ9P219 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 AL645929.1-201ENST00000420084 975 ntBASIC17.54■□□□□ 0.4
CCDC88CQ9P219 MCCD1P1-208ENST00000445732 328 ntBASIC17.54■□□□□ 0.4
CCDC88CQ9P219 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC88CQ9P219 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms