Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
BRF1Q92994 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRF1Q92994 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRF1Q92994 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRF1Q92994 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.68■■□□□ 1.06
BRF1Q92994 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRF1Q92994 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRF1Q92994 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.67■■□□□ 1.06
BRF1Q92994 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.67■■□□□ 1.06
BRF1Q92994 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRF1Q92994 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
BRF1Q92994 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
BRF1Q92994 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.67■■□□□ 1.06
BRF1Q92994 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.67■■□□□ 1.06
BRF1Q92994 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRF1Q92994 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.67■■□□□ 1.06
BRF1Q92994 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.67■■□□□ 1.06
BRF1Q92994 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
BRF1Q92994 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
BRF1Q92994 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
BRF1Q92994 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.67■■□□□ 1.06
BRF1Q92994 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.67■■□□□ 1.06
BRF1Q92994 AC073912.3-201ENST00000624414 853 ntBASIC21.67■■□□□ 1.06
BRF1Q92994 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.67■■□□□ 1.06
BRF1Q92994 AC133561.5-201ENST00000635547 218 ntBASIC21.67■■□□□ 1.06
BRF1Q92994 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRF1Q92994 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRF1Q92994 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.67■■□□□ 1.06
BRF1Q92994 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.67■■□□□ 1.06
BRF1Q92994 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRF1Q92994 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.67■■□□□ 1.06
BRF1Q92994 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRF1Q92994 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.67■■□□□ 1.06
BRF1Q92994 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.67■■□□□ 1.06
BRF1Q92994 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.67■■□□□ 1.06
BRF1Q92994 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRF1Q92994 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRF1Q92994 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
BRF1Q92994 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BRF1Q92994 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
BRF1Q92994 AC009102.3-201ENST00000623118 1491 ntBASIC21.66■■□□□ 1.06
BRF1Q92994 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRF1Q92994 NOC2LP1-202ENST00000452600 2235 ntBASIC21.66■■□□□ 1.06
BRF1Q92994 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRF1Q92994 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.66■■□□□ 1.06
BRF1Q92994 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
BRF1Q92994 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.66■■□□□ 1.06
BRF1Q92994 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.66■■□□□ 1.06
BRF1Q92994 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.66■■□□□ 1.06
BRF1Q92994 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.66■■□□□ 1.06
BRF1Q92994 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.66■■□□□ 1.06
BRF1Q92994 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BRF1Q92994 AC024243.1-201ENST00000609234 778 ntBASIC21.66■■□□□ 1.06
BRF1Q92994 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.66■■□□□ 1.06
BRF1Q92994 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BRF1Q92994 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRF1Q92994 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.66■■□□□ 1.06
BRF1Q92994 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.66■■□□□ 1.06
BRF1Q92994 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRF1Q92994 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
BRF1Q92994 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BRF1Q92994 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.66■■□□□ 1.06
BRF1Q92994 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BRF1Q92994 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.65■■□□□ 1.06
BRF1Q92994 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRF1Q92994 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.65■■□□□ 1.06
BRF1Q92994 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.65■■□□□ 1.06
BRF1Q92994 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
BRF1Q92994 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRF1Q92994 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRF1Q92994 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRF1Q92994 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.65■■□□□ 1.06
BRF1Q92994 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRF1Q92994 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
BRF1Q92994 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.65■■□□□ 1.06
BRF1Q92994 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
BRF1Q92994 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
BRF1Q92994 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRF1Q92994 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.65■■□□□ 1.06
BRF1Q92994 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
BRF1Q92994 MIR149-201ENST00000384879 89 ntBASIC21.65■■□□□ 1.06
BRF1Q92994 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BRF1Q92994 ECEL1P3-201ENST00000427961 737 ntBASIC21.65■■□□□ 1.06
BRF1Q92994 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
BRF1Q92994 SLC25A3P1-201ENST00000443844 931 ntBASIC21.65■■□□□ 1.06
BRF1Q92994 SEC1P-202ENST00000473944 940 ntBASIC21.65■■□□□ 1.06
BRF1Q92994 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.65■■□□□ 1.06
BRF1Q92994 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.65■■□□□ 1.06
BRF1Q92994 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.65■■□□□ 1.06
BRF1Q92994 AL512604.3-201ENST00000569583 964 ntBASIC21.65■■□□□ 1.06
BRF1Q92994 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
BRF1Q92994 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.65■■□□□ 1.06
BRF1Q92994 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.65■■□□□ 1.06
BRF1Q92994 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.65■■□□□ 1.06
BRF1Q92994 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRF1Q92994 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
BRF1Q92994 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
BRF1Q92994 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.65■■□□□ 1.06
BRF1Q92994 AL133373.2-201ENST00000623187 2828 ntBASIC21.65■■□□□ 1.06
BRF1Q92994 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms