Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE1Q8NF91 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE1Q8NF91 PP7080-204ENST00000510714 601 ntTSL 3 BASIC5.69□□□□□ -1.5
SYNE1Q8NF91 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE1Q8NF91 AC004263.2-201ENST00000617183 678 ntBASIC5.69□□□□□ -1.5
SYNE1Q8NF91 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE1Q8NF91 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC5.69□□□□□ -1.5
SYNE1Q8NF91 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SYNE1Q8NF91 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC5.69□□□□□ -1.5
SYNE1Q8NF91 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SYNE1Q8NF91 AC009237.14-201ENST00000609975 1594 ntBASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SKP2-204ENST00000508514 821 ntTSL 3 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 GPALPP1-207ENST00000611650 899 ntBASIC5.68□□□□□ -1.5
SYNE1Q8NF91 NPAP1P7-201ENST00000613027 823 ntBASIC5.68□□□□□ -1.5
SYNE1Q8NF91 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 BID-204ENST00000399767 2129 ntTSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 TSPY19P-201ENST00000418461 509 ntBASIC5.68□□□□□ -1.5
SYNE1Q8NF91 TSPY18P-201ENST00000441642 509 ntBASIC5.68□□□□□ -1.5
SYNE1Q8NF91 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 LY6E-213ENST00000522528 606 ntTSL 3 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC5.68□□□□□ -1.5
SYNE1Q8NF91 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms