Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 HOXB1-202ENST00000577092 1414 ntBASIC20.53■□□□□ 0.88
USP38Q8NB14 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.52■□□□□ 0.88
USP38Q8NB14 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 AL512353.2-201ENST00000448759 1962 ntBASIC20.52■□□□□ 0.88
USP38Q8NB14 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.52■□□□□ 0.88
USP38Q8NB14 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
USP38Q8NB14 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.52■□□□□ 0.88
USP38Q8NB14 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.52■□□□□ 0.88
USP38Q8NB14 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.52■□□□□ 0.88
USP38Q8NB14 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.52■□□□□ 0.88
USP38Q8NB14 BX640515.1-201ENST00000617215 977 ntBASIC20.52■□□□□ 0.88
USP38Q8NB14 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
USP38Q8NB14 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.52■□□□□ 0.88
USP38Q8NB14 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP38Q8NB14 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.52■□□□□ 0.87
USP38Q8NB14 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
USP38Q8NB14 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
USP38Q8NB14 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
USP38Q8NB14 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
USP38Q8NB14 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 TEX21P-204ENST00000641479 1693 ntBASIC20.51■□□□□ 0.87
USP38Q8NB14 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
USP38Q8NB14 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
USP38Q8NB14 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
USP38Q8NB14 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
USP38Q8NB14 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
USP38Q8NB14 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.51■□□□□ 0.87
USP38Q8NB14 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.51■□□□□ 0.87
USP38Q8NB14 AL161938.1-201ENST00000569833 2180 ntBASIC20.51■□□□□ 0.87
USP38Q8NB14 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
USP38Q8NB14 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
USP38Q8NB14 PMS2P1-201ENST00000431037 1228 ntBASIC20.51■□□□□ 0.87
USP38Q8NB14 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.51■□□□□ 0.87
USP38Q8NB14 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.51■□□□□ 0.87
USP38Q8NB14 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.51■□□□□ 0.87
USP38Q8NB14 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.51■□□□□ 0.87
USP38Q8NB14 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.51■□□□□ 0.87
USP38Q8NB14 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.51■□□□□ 0.87
USP38Q8NB14 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.51■□□□□ 0.87
USP38Q8NB14 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.51■□□□□ 0.87
USP38Q8NB14 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 HLA-A-201ENST00000376802 1334 ntBASIC20.51■□□□□ 0.87
USP38Q8NB14 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP38Q8NB14 AL162741.1-201ENST00000565563 1558 ntBASIC20.51■□□□□ 0.87
USP38Q8NB14 AC093525.10-201ENST00000625130 1569 ntBASIC20.51■□□□□ 0.87
USP38Q8NB14 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.5■□□□□ 0.87
USP38Q8NB14 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.5■□□□□ 0.87
USP38Q8NB14 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.5■□□□□ 0.87
USP38Q8NB14 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.5■□□□□ 0.87
USP38Q8NB14 MIR662-201ENST00000384847 95 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 MIR574-201ENST00000385209 96 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 MIR1233-2-201ENST00000408138 82 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 MIR1233-1-201ENST00000408722 82 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 TSPY12P-201ENST00000421279 868 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.5■□□□□ 0.87
USP38Q8NB14 KRT8P26-201ENST00000534154 1276 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 AL662844.1-201ENST00000546340 181 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.5■□□□□ 0.87
USP38Q8NB14 AL136038.4-201ENST00000603606 1261 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 AC079602.3-201ENST00000623931 403 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 AL157888.1-201ENST00000631930 593 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 AF228730.7-201ENST00000641842 219 ntBASIC20.5■□□□□ 0.87
USP38Q8NB14 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.5■□□□□ 0.87
USP38Q8NB14 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
USP38Q8NB14 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP38Q8NB14 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP38Q8NB14 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP38Q8NB14 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.49■□□□□ 0.87
USP38Q8NB14 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms