Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CLPTM1O96005 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CLPTM1O96005 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.39■□□□□ 0.38
CLPTM1O96005 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLPTM1O96005 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLPTM1O96005 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.39■□□□□ 0.38
CLPTM1O96005 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLPTM1O96005 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLPTM1O96005 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CLPTM1O96005 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CLPTM1O96005 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.39■□□□□ 0.37
CLPTM1O96005 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CLPTM1O96005 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.39■□□□□ 0.37
CLPTM1O96005 C2orf69P4-201ENST00000565394 541 ntBASIC17.39■□□□□ 0.37
CLPTM1O96005 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.39■□□□□ 0.37
CLPTM1O96005 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.39■□□□□ 0.37
CLPTM1O96005 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.39■□□□□ 0.37
CLPTM1O96005 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CLPTM1O96005 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.39■□□□□ 0.37
CLPTM1O96005 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.39■□□□□ 0.37
CLPTM1O96005 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLPTM1O96005 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLPTM1O96005 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLPTM1O96005 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.38■□□□□ 0.37
CLPTM1O96005 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CLPTM1O96005 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CLPTM1O96005 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.38■□□□□ 0.37
CLPTM1O96005 CROCCP1-201ENST00000426910 5675 ntBASIC17.38■□□□□ 0.37
CLPTM1O96005 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.38■□□□□ 0.37
CLPTM1O96005 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.38■□□□□ 0.37
CLPTM1O96005 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.38■□□□□ 0.37
CLPTM1O96005 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.38■□□□□ 0.37
CLPTM1O96005 RNA5SP413-201ENST00000516373 109 ntBASIC17.38■□□□□ 0.37
CLPTM1O96005 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.38■□□□□ 0.37
CLPTM1O96005 CD99P1-205ENST00000527459 561 ntBASIC17.38■□□□□ 0.37
CLPTM1O96005 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
CLPTM1O96005 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CLPTM1O96005 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CLPTM1O96005 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CLPTM1O96005 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLPTM1O96005 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
CLPTM1O96005 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 FEM1AP3-201ENST00000403722 1741 ntBASIC17.38■□□□□ 0.37
CLPTM1O96005 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.38■□□□□ 0.37
CLPTM1O96005 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLPTM1O96005 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLPTM1O96005 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CLPTM1O96005 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
CLPTM1O96005 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CLPTM1O96005 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.37■□□□□ 0.37
CLPTM1O96005 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.37■□□□□ 0.37
CLPTM1O96005 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.37■□□□□ 0.37
CLPTM1O96005 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.37■□□□□ 0.37
CLPTM1O96005 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLPTM1O96005 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.37■□□□□ 0.37
CLPTM1O96005 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.37■□□□□ 0.37
CLPTM1O96005 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms