Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX3O95343 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX3O95343 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SIX3O95343 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX3O95343 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.02■□□□□ 0.48
SIX3O95343 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.02■□□□□ 0.48
SIX3O95343 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SIX3O95343 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.02■□□□□ 0.48
SIX3O95343 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.02■□□□□ 0.48
SIX3O95343 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.02■□□□□ 0.48
SIX3O95343 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX3O95343 MIR3180-5-201ENST00000583743 153 ntBASIC18.02■□□□□ 0.48
SIX3O95343 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
SIX3O95343 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.02■□□□□ 0.48
SIX3O95343 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.02■□□□□ 0.48
SIX3O95343 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
SIX3O95343 FZD10-202ENST00000539839 3282 ntBASIC18.02■□□□□ 0.47
SIX3O95343 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
SIX3O95343 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.02■□□□□ 0.47
SIX3O95343 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.01■□□□□ 0.47
SIX3O95343 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.01■□□□□ 0.47
SIX3O95343 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SIX3O95343 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.01■□□□□ 0.47
SIX3O95343 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 AP000593.1-201ENST00000393668 712 ntBASIC18.01■□□□□ 0.47
SIX3O95343 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.01■□□□□ 0.47
SIX3O95343 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.01■□□□□ 0.47
SIX3O95343 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.01■□□□□ 0.47
SIX3O95343 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SIX3O95343 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SIX3O95343 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18■□□□□ 0.47
SIX3O95343 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX3O95343 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SIX3O95343 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18■□□□□ 0.47
SIX3O95343 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18■□□□□ 0.47
SIX3O95343 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18■□□□□ 0.47
SIX3O95343 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SIX3O95343 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SIX3O95343 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SIX3O95343 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX3O95343 TSPY7P-201ENST00000431358 1114 ntBASIC18■□□□□ 0.47
SIX3O95343 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18■□□□□ 0.47
SIX3O95343 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18■□□□□ 0.47
SIX3O95343 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18■□□□□ 0.47
SIX3O95343 AP005242.2-201ENST00000580065 1175 ntBASIC18■□□□□ 0.47
SIX3O95343 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SIX3O95343 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18■□□□□ 0.47
SIX3O95343 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SIX3O95343 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18■□□□□ 0.47
SIX3O95343 AC138028.4-201ENST00000564984 1845 ntBASIC18■□□□□ 0.47
SIX3O95343 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SIX3O95343 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SIX3O95343 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX3O95343 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SIX3O95343 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX3O95343 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SIX3O95343 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX3O95343 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.99■□□□□ 0.47
SIX3O95343 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX3O95343 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.99■□□□□ 0.47
SIX3O95343 RBM17P1-201ENST00000453646 1190 ntBASIC17.99■□□□□ 0.47
SIX3O95343 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX3O95343 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX3O95343 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SIX3O95343 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
SIX3O95343 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.99■□□□□ 0.47
SIX3O95343 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
SIX3O95343 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX3O95343 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SIX3O95343 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX3O95343 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
SIX3O95343 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms