Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SSX4O60224 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SSX4O60224 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SSX4O60224 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.72■□□□□ 0.27
SSX4O60224 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SSX4O60224 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SSX4O60224 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.72■□□□□ 0.27
SSX4O60224 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SSX4O60224 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.72■□□□□ 0.27
SSX4O60224 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SSX4O60224 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.71■□□□□ 0.27
SSX4O60224 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.71■□□□□ 0.27
SSX4O60224 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SSX4O60224 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SSX4O60224 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
SSX4O60224 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 KSR1P1-201ENST00000446298 240 ntBASIC16.71■□□□□ 0.27
SSX4O60224 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 AC005363.2-201ENST00000618631 242 ntBASIC16.71■□□□□ 0.27
SSX4O60224 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.71■□□□□ 0.27
SSX4O60224 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.71■□□□□ 0.27
SSX4O60224 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SSX4O60224 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SSX4O60224 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
SSX4O60224 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.71■□□□□ 0.26
SSX4O60224 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
SSX4O60224 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
SSX4O60224 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SSX4O60224 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SSX4O60224 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SSX4O60224 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.7■□□□□ 0.26
SSX4O60224 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
SSX4O60224 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.7■□□□□ 0.26
SSX4O60224 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SSX4O60224 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SSX4O60224 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 NIFKP9-201ENST00000419265 221 ntBASIC16.7■□□□□ 0.26
SSX4O60224 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SSX4O60224 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.7■□□□□ 0.26
SSX4O60224 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.7■□□□□ 0.26
SSX4O60224 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.7■□□□□ 0.26
SSX4O60224 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
SSX4O60224 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 KRT16P1-201ENST00000399124 1418 ntBASIC16.7■□□□□ 0.26
SSX4O60224 KRT8P9-201ENST00000558927 1449 ntBASIC16.7■□□□□ 0.26
SSX4O60224 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SSX4O60224 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
SSX4O60224 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
SSX4O60224 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SSX4O60224 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SSX4O60224 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.69■□□□□ 0.26
SSX4O60224 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SSX4O60224 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SSX4O60224 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SSX4O60224 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SSX4O60224 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SSX4O60224 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SSX4O60224 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.69■□□□□ 0.26
SSX4O60224 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SSX4O60224 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms