Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
CHMP2AO43633 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CHMP2AO43633 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CHMP2AO43633 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP2AO43633 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.69■□□□□ 0.9
CHMP2AO43633 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP2AO43633 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP2AO43633 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CHMP2AO43633 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP2AO43633 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP2AO43633 PVRIG2P-201ENST00000435460 978 ntBASIC20.69■□□□□ 0.9
CHMP2AO43633 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.69■□□□□ 0.9
CHMP2AO43633 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP2AO43633 AC009065.1-201ENST00000564055 1225 ntBASIC20.69■□□□□ 0.9
CHMP2AO43633 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP2AO43633 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.69■□□□□ 0.9
CHMP2AO43633 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.69■□□□□ 0.9
CHMP2AO43633 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP2AO43633 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP2AO43633 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
CHMP2AO43633 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP2AO43633 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP2AO43633 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP2AO43633 AC009102.3-201ENST00000623118 1491 ntBASIC20.69■□□□□ 0.9
CHMP2AO43633 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CHMP2AO43633 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CHMP2AO43633 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP2AO43633 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP2AO43633 MIR149-201ENST00000384879 89 ntBASIC20.68■□□□□ 0.9
CHMP2AO43633 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP2AO43633 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP2AO43633 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP2AO43633 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
CHMP2AO43633 AC091076.1-201ENST00000610741 619 ntBASIC20.68■□□□□ 0.9
CHMP2AO43633 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP2AO43633 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP2AO43633 AP000550.4-202ENST00000639755 178 ntBASIC20.68■□□□□ 0.9
CHMP2AO43633 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP2AO43633 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CHMP2AO43633 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP2AO43633 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP2AO43633 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.67■□□□□ 0.9
CHMP2AO43633 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP2AO43633 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP2AO43633 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP2AO43633 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CHMP2AO43633 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP2AO43633 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP2AO43633 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP2AO43633 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP2AO43633 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.67■□□□□ 0.9
CHMP2AO43633 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.67■□□□□ 0.9
CHMP2AO43633 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP2AO43633 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP2AO43633 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP2AO43633 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP2AO43633 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP2AO43633 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP2AO43633 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP2AO43633 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CHMP2AO43633 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP2AO43633 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP2AO43633 UPK3BP1-201ENST00000428678 509 ntBASIC20.66■□□□□ 0.9
CHMP2AO43633 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP2AO43633 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.66■□□□□ 0.9
CHMP2AO43633 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
CHMP2AO43633 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP2AO43633 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.66■□□□□ 0.9
CHMP2AO43633 AL162741.1-201ENST00000565563 1558 ntBASIC20.66■□□□□ 0.9
CHMP2AO43633 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP2AO43633 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP2AO43633 SDHAP2-201ENST00000455183 2001 ntBASIC20.66■□□□□ 0.9
CHMP2AO43633 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP2AO43633 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CHMP2AO43633 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP2AO43633 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
CHMP2AO43633 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP2AO43633 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP2AO43633 WIZP1-201ENST00000531444 2299 ntBASIC20.65■□□□□ 0.9
CHMP2AO43633 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP2AO43633 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.65■□□□□ 0.9
CHMP2AO43633 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP2AO43633 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms