Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
HMGB3O15347 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGB3O15347 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HMGB3O15347 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HMGB3O15347 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HMGB3O15347 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.83□□□□□ -0.03
HMGB3O15347 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HMGB3O15347 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
HMGB3O15347 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC14.83□□□□□ -0.03
HMGB3O15347 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
HMGB3O15347 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGB3O15347 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGB3O15347 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 AL589743.5-201ENST00000616611 1050 ntBASIC14.83□□□□□ -0.04
HMGB3O15347 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGB3O15347 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGB3O15347 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
HMGB3O15347 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGB3O15347 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGB3O15347 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGB3O15347 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGB3O15347 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB3O15347 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HMGB3O15347 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB3O15347 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB3O15347 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB3O15347 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC14.82□□□□□ -0.04
HMGB3O15347 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HMGB3O15347 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
HMGB3O15347 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB3O15347 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC14.82□□□□□ -0.04
HMGB3O15347 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB3O15347 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC14.82□□□□□ -0.04
HMGB3O15347 AL139246.5-201ENST00000606645 996 ntBASIC14.82□□□□□ -0.04
HMGB3O15347 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC14.82□□□□□ -0.04
HMGB3O15347 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HMGB3O15347 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
HMGB3O15347 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HMGB3O15347 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.82□□□□□ -0.04
HMGB3O15347 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HMGB3O15347 AC068338.2-201ENST00000563278 1430 ntBASIC14.82□□□□□ -0.04
HMGB3O15347 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB3O15347 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HMGB3O15347 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB3O15347 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HMGB3O15347 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB3O15347 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms