Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CBX4O00257 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.81■□□□□ 0.6
CBX4O00257 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.81■□□□□ 0.6
CBX4O00257 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.81■□□□□ 0.6
CBX4O00257 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.81■□□□□ 0.6
CBX4O00257 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.81■□□□□ 0.6
CBX4O00257 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.81■□□□□ 0.6
CBX4O00257 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.81■□□□□ 0.6
CBX4O00257 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CBX4O00257 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CBX4O00257 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CBX4O00257 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CBX4O00257 AC004408.2-201ENST00000623613 2777 ntBASIC18.81■□□□□ 0.6
CBX4O00257 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CBX4O00257 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CBX4O00257 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.8■□□□□ 0.6
CBX4O00257 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CBX4O00257 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CBX4O00257 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CBX4O00257 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CBX4O00257 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.8■□□□□ 0.6
CBX4O00257 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
CBX4O00257 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CBX4O00257 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CBX4O00257 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.8■□□□□ 0.6
CBX4O00257 VENTXP5-201ENST00000523979 775 ntBASIC18.8■□□□□ 0.6
CBX4O00257 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.8■□□□□ 0.6
CBX4O00257 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.8■□□□□ 0.6
CBX4O00257 KRT126P-201ENST00000549467 1181 ntBASIC18.8■□□□□ 0.6
CBX4O00257 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.8■□□□□ 0.6
CBX4O00257 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CBX4O00257 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CBX4O00257 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CBX4O00257 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CBX4O00257 AC126763.1-201ENST00000552015 2118 ntBASIC18.8■□□□□ 0.6
CBX4O00257 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CBX4O00257 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.8■□□□□ 0.6
CBX4O00257 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CBX4O00257 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.79■□□□□ 0.6
CBX4O00257 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CBX4O00257 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.79■□□□□ 0.6
CBX4O00257 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CBX4O00257 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CBX4O00257 PVRIG2P-201ENST00000435460 978 ntBASIC18.79■□□□□ 0.6
CBX4O00257 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.79■□□□□ 0.6
CBX4O00257 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.79■□□□□ 0.6
CBX4O00257 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.79■□□□□ 0.6
CBX4O00257 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.79■□□□□ 0.6
CBX4O00257 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.79■□□□□ 0.6
CBX4O00257 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CBX4O00257 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.79■□□□□ 0.6
CBX4O00257 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CBX4O00257 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 IER3-202ENST00000376377 1350 ntBASIC18.79■□□□□ 0.6
CBX4O00257 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CBX4O00257 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.79■□□□□ 0.6
CBX4O00257 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.78■□□□□ 0.6
CBX4O00257 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CBX4O00257 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CBX4O00257 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.78■□□□□ 0.6
CBX4O00257 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 MIR149-201ENST00000384879 89 ntBASIC18.78■□□□□ 0.6
CBX4O00257 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 SPDYE13P-201ENST00000445314 798 ntBASIC18.78■□□□□ 0.6
CBX4O00257 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.78■□□□□ 0.6
CBX4O00257 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.78■□□□□ 0.6
CBX4O00257 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.78■□□□□ 0.6
CBX4O00257 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.78■□□□□ 0.6
CBX4O00257 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms