Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UBE2D4Q9Y2X8 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UBE2D4Q9Y2X8 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC17.3■□□□□ 0.36
UBE2D4Q9Y2X8 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UBE2D4Q9Y2X8 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
UBE2D4Q9Y2X8 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
UBE2D4Q9Y2X8 LINC00273-201ENST00000539813 1452 ntBASIC17.3■□□□□ 0.36
UBE2D4Q9Y2X8 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
UBE2D4Q9Y2X8 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
UBE2D4Q9Y2X8 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UBE2D4Q9Y2X8 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UBE2D4Q9Y2X8 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UBE2D4Q9Y2X8 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBE2D4Q9Y2X8 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UBE2D4Q9Y2X8 AP004609.3-201ENST00000610705 1884 ntBASIC17.28■□□□□ 0.36
UBE2D4Q9Y2X8 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBE2D4Q9Y2X8 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
UBE2D4Q9Y2X8 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC17.27■□□□□ 0.36
UBE2D4Q9Y2X8 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBE2D4Q9Y2X8 AC108673.1-201ENST00000510422 1159 ntBASIC17.27■□□□□ 0.36
UBE2D4Q9Y2X8 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
UBE2D4Q9Y2X8 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UBE2D4Q9Y2X8 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
UBE2D4Q9Y2X8 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UBE2D4Q9Y2X8 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
UBE2D4Q9Y2X8 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UBE2D4Q9Y2X8 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBE2D4Q9Y2X8 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
UBE2D4Q9Y2X8 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBE2D4Q9Y2X8 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBE2D4Q9Y2X8 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC17.26■□□□□ 0.35
UBE2D4Q9Y2X8 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBE2D4Q9Y2X8 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UBE2D4Q9Y2X8 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
UBE2D4Q9Y2X8 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UBE2D4Q9Y2X8 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC17.25■□□□□ 0.35
UBE2D4Q9Y2X8 AC005559.1-201ENST00000589661 871 ntBASIC17.25■□□□□ 0.35
UBE2D4Q9Y2X8 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UBE2D4Q9Y2X8 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
UBE2D4Q9Y2X8 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
UBE2D4Q9Y2X8 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 PKM-204ENST00000449901 2526 ntTSL 2 BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
UBE2D4Q9Y2X8 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBE2D4Q9Y2X8 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBE2D4Q9Y2X8 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBE2D4Q9Y2X8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC17.22■□□□□ 0.35
UBE2D4Q9Y2X8 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBE2D4Q9Y2X8 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC17.21■□□□□ 0.35
UBE2D4Q9Y2X8 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC17.21■□□□□ 0.35
UBE2D4Q9Y2X8 MIR6090-201ENST00000622481 60 ntBASIC17.21■□□□□ 0.35
UBE2D4Q9Y2X8 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC17.21■□□□□ 0.34
UBE2D4Q9Y2X8 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
UBE2D4Q9Y2X8 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
UBE2D4Q9Y2X8 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UBE2D4Q9Y2X8 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UBE2D4Q9Y2X8 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
UBE2D4Q9Y2X8 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
UBE2D4Q9Y2X8 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
UBE2D4Q9Y2X8 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UBE2D4Q9Y2X8 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
UBE2D4Q9Y2X8 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
UBE2D4Q9Y2X8 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
UBE2D4Q9Y2X8 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
UBE2D4Q9Y2X8 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
UBE2D4Q9Y2X8 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
UBE2D4Q9Y2X8 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
UBE2D4Q9Y2X8 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
UBE2D4Q9Y2X8 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
UBE2D4Q9Y2X8 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
UBE2D4Q9Y2X8 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC17.17■□□□□ 0.34
UBE2D4Q9Y2X8 HNRNPLP2-201ENST00000568980 1570 ntBASIC17.17■□□□□ 0.34
UBE2D4Q9Y2X8 AC142472.1-201ENST00000612013 1741 ntBASIC17.17■□□□□ 0.34
UBE2D4Q9Y2X8 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
UBE2D4Q9Y2X8 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
UBE2D4Q9Y2X8 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
UBE2D4Q9Y2X8 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
UBE2D4Q9Y2X8 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
UBE2D4Q9Y2X8 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
UBE2D4Q9Y2X8 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
UBE2D4Q9Y2X8 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
UBE2D4Q9Y2X8 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
UBE2D4Q9Y2X8 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
UBE2D4Q9Y2X8 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
UBE2D4Q9Y2X8 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC17.15■□□□□ 0.34
UBE2D4Q9Y2X8 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC17.14■□□□□ 0.34
UBE2D4Q9Y2X8 SNAI3-AS1-204ENST00000567997 2048 ntBASIC17.14■□□□□ 0.34
UBE2D4Q9Y2X8 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
UBE2D4Q9Y2X8 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
UBE2D4Q9Y2X8 SUZ12P1-203ENST00000578195 985 ntBASIC17.14■□□□□ 0.33
UBE2D4Q9Y2X8 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms