Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
DEPDC4Q8N2C3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
DEPDC4Q8N2C3 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
DEPDC4Q8N2C3 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
DEPDC4Q8N2C3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC22.95■■□□□ 1.26
DEPDC4Q8N2C3 MIR7108-201ENST00000614319 87 ntBASIC22.95■■□□□ 1.26
DEPDC4Q8N2C3 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
DEPDC4Q8N2C3 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
DEPDC4Q8N2C3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.94■■□□□ 1.26
DEPDC4Q8N2C3 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
DEPDC4Q8N2C3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.93■■□□□ 1.26
DEPDC4Q8N2C3 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
DEPDC4Q8N2C3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC22.93■■□□□ 1.26
DEPDC4Q8N2C3 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
DEPDC4Q8N2C3 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
DEPDC4Q8N2C3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
DEPDC4Q8N2C3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
DEPDC4Q8N2C3 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
DEPDC4Q8N2C3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
DEPDC4Q8N2C3 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
DEPDC4Q8N2C3 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC22.92■■□□□ 1.26
DEPDC4Q8N2C3 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
DEPDC4Q8N2C3 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
DEPDC4Q8N2C3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.91■■□□□ 1.26
DEPDC4Q8N2C3 AC018358.1-201ENST00000631079 1402 ntBASIC22.91■■□□□ 1.26
DEPDC4Q8N2C3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.9■■□□□ 1.26
DEPDC4Q8N2C3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC22.9■■□□□ 1.26
DEPDC4Q8N2C3 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
DEPDC4Q8N2C3 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
DEPDC4Q8N2C3 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
DEPDC4Q8N2C3 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
DEPDC4Q8N2C3 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
DEPDC4Q8N2C3 ZNRF2P2-203ENST00000454624 420 ntBASIC22.89■■□□□ 1.25
DEPDC4Q8N2C3 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
DEPDC4Q8N2C3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
DEPDC4Q8N2C3 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
DEPDC4Q8N2C3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.89■■□□□ 1.25
DEPDC4Q8N2C3 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
DEPDC4Q8N2C3 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
DEPDC4Q8N2C3 AC020928.2-201ENST00000588717 2197 ntBASIC22.89■■□□□ 1.25
DEPDC4Q8N2C3 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
DEPDC4Q8N2C3 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC22.88■■□□□ 1.25
DEPDC4Q8N2C3 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC22.88■■□□□ 1.25
DEPDC4Q8N2C3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC22.88■■□□□ 1.25
DEPDC4Q8N2C3 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
DEPDC4Q8N2C3 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
DEPDC4Q8N2C3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC22.87■■□□□ 1.25
DEPDC4Q8N2C3 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
DEPDC4Q8N2C3 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.87■■□□□ 1.25
DEPDC4Q8N2C3 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
DEPDC4Q8N2C3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
DEPDC4Q8N2C3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
DEPDC4Q8N2C3 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
DEPDC4Q8N2C3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.86■■□□□ 1.25
DEPDC4Q8N2C3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
DEPDC4Q8N2C3 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
DEPDC4Q8N2C3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.85■■□□□ 1.25
DEPDC4Q8N2C3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.85■■□□□ 1.25
DEPDC4Q8N2C3 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
DEPDC4Q8N2C3 MIR6090-201ENST00000622481 60 ntBASIC22.85■■□□□ 1.25
DEPDC4Q8N2C3 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
DEPDC4Q8N2C3 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
DEPDC4Q8N2C3 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
DEPDC4Q8N2C3 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC22.84■■□□□ 1.25
DEPDC4Q8N2C3 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
DEPDC4Q8N2C3 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC22.84■■□□□ 1.25
DEPDC4Q8N2C3 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
DEPDC4Q8N2C3 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
DEPDC4Q8N2C3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.83■■□□□ 1.25
DEPDC4Q8N2C3 MEST-211ENST00000437945 1455 ntTSL 5 BASIC22.83■■□□□ 1.25
DEPDC4Q8N2C3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
DEPDC4Q8N2C3 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
DEPDC4Q8N2C3 AC021231.2-201ENST00000594613 730 ntBASIC22.82■■□□□ 1.24
DEPDC4Q8N2C3 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC22.82■■□□□ 1.24
DEPDC4Q8N2C3 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
DEPDC4Q8N2C3 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC22.82■■□□□ 1.24
DEPDC4Q8N2C3 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.81■■□□□ 1.24
DEPDC4Q8N2C3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC22.81■■□□□ 1.24
DEPDC4Q8N2C3 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
DEPDC4Q8N2C3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
DEPDC4Q8N2C3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
DEPDC4Q8N2C3 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
DEPDC4Q8N2C3 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
DEPDC4Q8N2C3 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
DEPDC4Q8N2C3 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.8■■□□□ 1.24
DEPDC4Q8N2C3 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.8■■□□□ 1.24
DEPDC4Q8N2C3 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
DEPDC4Q8N2C3 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
DEPDC4Q8N2C3 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.8■■□□□ 1.24
DEPDC4Q8N2C3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
DEPDC4Q8N2C3 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
DEPDC4Q8N2C3 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
DEPDC4Q8N2C3 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
DEPDC4Q8N2C3 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
DEPDC4Q8N2C3 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
DEPDC4Q8N2C3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
DEPDC4Q8N2C3 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC22.78■■□□□ 1.24
DEPDC4Q8N2C3 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.78■■□□□ 1.24
DEPDC4Q8N2C3 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.78■■□□□ 1.24
DEPDC4Q8N2C3 DUSP8P4-201ENST00000399538 1761 ntBASIC22.78■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms