Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88AQ3V6T2 AC126177.7-201ENST00000547904 679 ntBASIC31.12■■■□□ 2.57
CCDC88AQ3V6T2 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.12■■■□□ 2.57
CCDC88AQ3V6T2 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC88AQ3V6T2 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC88AQ3V6T2 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.11■■■□□ 2.57
CCDC88AQ3V6T2 AC025884.2-201ENST00000553429 711 ntBASIC31.1■■■□□ 2.57
CCDC88AQ3V6T2 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC88AQ3V6T2 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.09■■■□□ 2.57
CCDC88AQ3V6T2 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC88AQ3V6T2 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC31.09■■■□□ 2.57
CCDC88AQ3V6T2 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88AQ3V6T2 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
CCDC88AQ3V6T2 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.08■■■□□ 2.57
CCDC88AQ3V6T2 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88AQ3V6T2 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CCDC88AQ3V6T2 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
CCDC88AQ3V6T2 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
CCDC88AQ3V6T2 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CCDC88AQ3V6T2 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
CCDC88AQ3V6T2 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC88AQ3V6T2 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC31.06■■■□□ 2.56
CCDC88AQ3V6T2 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC88AQ3V6T2 GUSBP5-201ENST00000418136 578 ntBASIC31.06■■■□□ 2.56
CCDC88AQ3V6T2 SPCS2P3-201ENST00000500401 656 ntBASIC31.06■■■□□ 2.56
CCDC88AQ3V6T2 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.06■■■□□ 2.56
CCDC88AQ3V6T2 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.06■■■□□ 2.56
CCDC88AQ3V6T2 KRT8P33-201ENST00000508125 1423 ntBASIC31.06■■■□□ 2.56
CCDC88AQ3V6T2 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC31.06■■■□□ 2.56
CCDC88AQ3V6T2 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
CCDC88AQ3V6T2 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC31.05■■■□□ 2.56
CCDC88AQ3V6T2 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88AQ3V6T2 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88AQ3V6T2 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88AQ3V6T2 AC093536.1-201ENST00000569153 554 ntBASIC31.04■■■□□ 2.56
CCDC88AQ3V6T2 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.04■■■□□ 2.56
CCDC88AQ3V6T2 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88AQ3V6T2 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88AQ3V6T2 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC88AQ3V6T2 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC88AQ3V6T2 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC31.03■■■□□ 2.56
CCDC88AQ3V6T2 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
CCDC88AQ3V6T2 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC88AQ3V6T2 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC88AQ3V6T2 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC88AQ3V6T2 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
CCDC88AQ3V6T2 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
CCDC88AQ3V6T2 PVT1_1.1-201ENST00000615125 194 ntBASIC31.01■■■□□ 2.56
CCDC88AQ3V6T2 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.01■■■□□ 2.55
CCDC88AQ3V6T2 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC88AQ3V6T2 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC88AQ3V6T2 THA1P-201ENST00000590384 1145 ntBASIC31.01■■■□□ 2.55
CCDC88AQ3V6T2 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC31■■■□□ 2.55
CCDC88AQ3V6T2 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC88AQ3V6T2 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88AQ3V6T2 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC30.99■■■□□ 2.55
CCDC88AQ3V6T2 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88AQ3V6T2 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
CCDC88AQ3V6T2 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC88AQ3V6T2 AC010980.1-201ENST00000587192 1142 ntBASIC30.98■■■□□ 2.55
CCDC88AQ3V6T2 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 RAP2CP1-202ENST00000605179 643 ntBASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 MIR4508-201ENST00000584178 70 ntBASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.97■■■□□ 2.55
CCDC88AQ3V6T2 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CCDC88AQ3V6T2 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CCDC88AQ3V6T2 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.96■■■□□ 2.55
CCDC88AQ3V6T2 AC103724.3-201ENST00000564481 992 ntBASIC30.95■■■□□ 2.55
CCDC88AQ3V6T2 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC30.95■■■□□ 2.54
CCDC88AQ3V6T2 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC30.95■■■□□ 2.54
CCDC88AQ3V6T2 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CCDC88AQ3V6T2 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
CCDC88AQ3V6T2 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC30.94■■■□□ 2.54
CCDC88AQ3V6T2 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC30.94■■■□□ 2.54
CCDC88AQ3V6T2 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
CCDC88AQ3V6T2 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CCDC88AQ3V6T2 SMPD5-203ENST00000639008 1464 ntBASIC30.94■■■□□ 2.54
CCDC88AQ3V6T2 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CCDC88AQ3V6T2 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC30.93■■■□□ 2.54
CCDC88AQ3V6T2 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC30.93■■■□□ 2.54
CCDC88AQ3V6T2 AC026202.3-201ENST00000600805 1127 ntBASIC30.92■■■□□ 2.54
CCDC88AQ3V6T2 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88AQ3V6T2 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC30.91■■■□□ 2.54
CCDC88AQ3V6T2 AC139795.1-202ENST00000500444 432 ntBASIC30.91■■■□□ 2.54
CCDC88AQ3V6T2 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88AQ3V6T2 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.91■■■□□ 2.54
CCDC88AQ3V6T2 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88AQ3V6T2 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC30.9■■■□□ 2.54
CCDC88AQ3V6T2 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CCDC88AQ3V6T2 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC30.9■■■□□ 2.54
CCDC88AQ3V6T2 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
CCDC88AQ3V6T2 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.53
CCDC88AQ3V6T2 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms