Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PDLIM4P50479 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM4P50479 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.12■□□□□ 0.97
PDLIM4P50479 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.11■□□□□ 0.97
PDLIM4P50479 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.11■□□□□ 0.97
PDLIM4P50479 AC018358.1-201ENST00000631079 1402 ntBASIC21.11■□□□□ 0.97
PDLIM4P50479 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM4P50479 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM4P50479 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM4P50479 AL033527.3-201ENST00000566366 1196 ntBASIC21.1■□□□□ 0.97
PDLIM4P50479 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDLIM4P50479 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.09■□□□□ 0.97
PDLIM4P50479 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.09■□□□□ 0.97
PDLIM4P50479 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PDLIM4P50479 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
PDLIM4P50479 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDLIM4P50479 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.09■□□□□ 0.97
PDLIM4P50479 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.09■□□□□ 0.97
PDLIM4P50479 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDLIM4P50479 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.08■□□□□ 0.97
PDLIM4P50479 AL157400.5-201ENST00000507624 621 ntBASIC21.08■□□□□ 0.97
PDLIM4P50479 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
PDLIM4P50479 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM4P50479 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM4P50479 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM4P50479 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.07■□□□□ 0.96
PDLIM4P50479 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM4P50479 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.06■□□□□ 0.96
PDLIM4P50479 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM4P50479 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM4P50479 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM4P50479 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PDLIM4P50479 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.06■□□□□ 0.96
PDLIM4P50479 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.06■□□□□ 0.96
PDLIM4P50479 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
PDLIM4P50479 AL359258.2-201ENST00000564063 1566 ntBASIC21.06■□□□□ 0.96
PDLIM4P50479 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
PDLIM4P50479 KRT18P60-201ENST00000312876 1297 ntBASIC21.05■□□□□ 0.96
PDLIM4P50479 TSPY13P-201ENST00000338964 914 ntBASIC21.05■□□□□ 0.96
PDLIM4P50479 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
PDLIM4P50479 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.05■□□□□ 0.96
PDLIM4P50479 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
PDLIM4P50479 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM4P50479 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM4P50479 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM4P50479 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM4P50479 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
PDLIM4P50479 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.04■□□□□ 0.96
PDLIM4P50479 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.04■□□□□ 0.96
PDLIM4P50479 AC007029.1-201ENST00000604183 313 ntBASIC21.04■□□□□ 0.96
PDLIM4P50479 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM4P50479 AC135731.1-201ENST00000569415 2548 ntBASIC21.04■□□□□ 0.96
PDLIM4P50479 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
PDLIM4P50479 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PDLIM4P50479 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
PDLIM4P50479 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PDLIM4P50479 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PDLIM4P50479 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
PDLIM4P50479 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM4P50479 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM4P50479 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.02■□□□□ 0.96
PDLIM4P50479 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM4P50479 SMPD5-203ENST00000639008 1464 ntBASIC21.01■□□□□ 0.95
PDLIM4P50479 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM4P50479 AC004987.1-201ENST00000428627 508 ntBASIC21.01■□□□□ 0.95
PDLIM4P50479 ATP5G2P3-201ENST00000429083 425 ntBASIC21.01■□□□□ 0.95
PDLIM4P50479 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM4P50479 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.01■□□□□ 0.95
PDLIM4P50479 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.01■□□□□ 0.95
PDLIM4P50479 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM4P50479 AL139393.2-201ENST00000608721 2025 ntBASIC21■□□□□ 0.95
PDLIM4P50479 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21■□□□□ 0.95
PDLIM4P50479 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM4P50479 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM4P50479 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM4P50479 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.99■□□□□ 0.95
PDLIM4P50479 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM4P50479 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM4P50479 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM4P50479 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM4P50479 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.98■□□□□ 0.95
PDLIM4P50479 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM4P50479 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM4P50479 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
PDLIM4P50479 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM4P50479 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM4P50479 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.98■□□□□ 0.95
PDLIM4P50479 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.97■□□□□ 0.95
PDLIM4P50479 AP002414.2-202ENST00000590929 1450 ntBASIC20.97■□□□□ 0.95
PDLIM4P50479 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM4P50479 AC133552.2-201ENST00000619106 1032 ntBASIC20.97■□□□□ 0.95
PDLIM4P50479 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM4P50479 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM4P50479 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM4P50479 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.96■□□□□ 0.95
PDLIM4P50479 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM4P50479 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.96■□□□□ 0.95
PDLIM4P50479 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM4P50479 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM4P50479 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms