Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YRF1-2YER190W 5046 nt8.67□□□□□ -1.02
RPN11P43588 PET10YKR046C 852 nt8.67□□□□□ -1.02
RPN11P43588 MRPL10YNL284C 969 nt8.67□□□□□ -1.02
RPN11P43588 NTG2YOL043C 1143 nt8.66□□□□□ -1.02
RPN11P43588 YLL058WYLL058W 1728 nt8.66□□□□□ -1.02
RPN11P43588 HXT11YOL156W 1704 nt8.66□□□□□ -1.02
RPN11P43588 TOP3YLR234W 1971 nt8.65□□□□□ -1.02
RPN11P43588 TPO1YLL028W 1761 nt8.65□□□□□ -1.02
RPN11P43588 URA8YJR103W 1737 nt8.65□□□□□ -1.03
RPN11P43588 YGL114WYGL114W 2178 nt8.65□□□□□ -1.03
RPN11P43588 GPA2YER020W 1350 nt8.64□□□□□ -1.03
RPN11P43588 RIM8YGL045W 1629 nt8.64□□□□□ -1.03
RPN11P43588 YDL172CYDL172C 480 nt8.63□□□□□ -1.03
RPN11P43588 VPS65YLR322W 315 nt8.63□□□□□ -1.03
RPN11P43588 YHL008CYHL008C 1884 nt8.63□□□□□ -1.03
RPN11P43588 FET5YFL041W 1869 nt8.62□□□□□ -1.03
RPN11P43588 YKR045CYKR045C 552 nt8.62□□□□□ -1.03
RPN11P43588 YLL056CYLL056C 897 nt8.62□□□□□ -1.03
RPN11P43588 MHT1YLL062C 975 nt8.62□□□□□ -1.03
RPN11P43588 CAR2YLR438W 1275 nt8.62□□□□□ -1.03
RPN11P43588 CSL4YNL232W 879 nt8.62□□□□□ -1.03
RPN11P43588 MSC3YLR219W 2187 nt8.62□□□□□ -1.03
RPN11P43588 ICP55YER078C 1536 nt8.61□□□□□ -1.03
RPN11P43588 SYF2YGR129W 648 nt8.61□□□□□ -1.03
RPN11P43588 MOG1YJR074W 657 nt8.61□□□□□ -1.03
RPN11P43588 YKL102CYKL102C 306 nt8.61□□□□□ -1.03
RPN11P43588 EMP65YER140W 1671 nt8.6□□□□□ -1.03
RPN11P43588 ERP5YHR110W 639 nt8.59□□□□□ -1.03
RPN11P43588 TIF2YJL138C 1188 nt8.59□□□□□ -1.03
RPN11P43588 TIF1YKR059W 1188 nt8.59□□□□□ -1.03
RPN11P43588 CUE4YML101C 354 nt8.59□□□□□ -1.03
RPN11P43588 DSF1YEL070W 1509 nt8.58□□□□□ -1.04
RPN11P43588 YNR073CYNR073C 1509 nt8.58□□□□□ -1.04
RPN11P43588 IVY1YDR229W 1362 nt8.58□□□□□ -1.04
RPN11P43588 YMR209CYMR209C 1374 nt8.58□□□□□ -1.04
RPN11P43588 SRM1YGL097W 1449 nt8.57□□□□□ -1.04
RPN11P43588 DON1YDR273W 1098 nt8.57□□□□□ -1.04
RPN11P43588 NAS6YGR232W 687 nt8.57□□□□□ -1.04
RPN11P43588 YGL102CYGL102C 429 nt8.56□□□□□ -1.04
RPN11P43588 EGD2YHR193C 525 nt8.56□□□□□ -1.04
RPN11P43588 ELA1YNL230C 1140 nt8.56□□□□□ -1.04
RPN11P43588 DUS3YLR401C 2007 nt8.56□□□□□ -1.04
RPN11P43588 SUF3tG(CCC)D 72 nt8.55□□□□□ -1.04
RPN11P43588 YPL102CYPL102C 303 nt8.53□□□□□ -1.04
RPN11P43588 UIP5YKR044W 1332 nt8.53□□□□□ -1.04
RPN11P43588 YHL018WYHL018W 363 nt8.51□□□□□ -1.05
RPN11P43588 PRI1YIR008C 1230 nt8.51□□□□□ -1.05
RPN11P43588 SCS7YMR272C 1155 nt8.51□□□□□ -1.05
RPN11P43588 YNL200CYNL200C 741 nt8.51□□□□□ -1.05
RPN11P43588 AVL9YLR114C 2295 nt8.5□□□□□ -1.05
RPN11P43588 MPC2YHR162W 390 nt8.5□□□□□ -1.05
RPN11P43588 SUR7YML052W 909 nt8.49□□□□□ -1.05
RPN11P43588 RNH1YMR234W 1047 nt8.49□□□□□ -1.05
RPN11P43588 YAH1YPL252C 519 nt8.49□□□□□ -1.05
RPN11P43588 PFS2YNL317W 1398 nt8.48□□□□□ -1.05
RPN11P43588 YKL077WYKL077W 1179 nt8.48□□□□□ -1.05
RPN11P43588 MLS1YNL117W 1665 nt8.48□□□□□ -1.05
RPN11P43588 AFG3YER017C 2286 nt8.48□□□□□ -1.05
RPN11P43588 YIL177CYIL177C 5277 nt8.48□□□□□ -1.05
RPN11P43588 ERG24YNL280C 1317 nt8.48□□□□□ -1.05
RPN11P43588 DLD1YDL174C 1764 nt8.48□□□□□ -1.05
RPN11P43588 RDR1YOR380W 1641 nt8.47□□□□□ -1.05
RPN11P43588 GON7YJL184W 372 nt8.47□□□□□ -1.05
RPN11P43588 PMT1YDL095W 2454 nt8.46□□□□□ -1.05
RPN11P43588 snR82snR82 268 nt8.46□□□□□ -1.06
RPN11P43588 ERG27YLR100W 1044 nt8.46□□□□□ -1.06
RPN11P43588 RCF2YNR018W 675 nt8.46□□□□□ -1.06
RPN11P43588 MTF2YDL044C 1323 nt8.46□□□□□ -1.06
RPN11P43588 HEL2YDR266C 1920 nt8.45□□□□□ -1.06
RPN11P43588 HVG1YER039C 750 nt8.45□□□□□ -1.06
RPN11P43588 SIT4YDL047W 936 nt8.44□□□□□ -1.06
RPN11P43588 CKB1YGL019W 837 nt8.44□□□□□ -1.06
RPN11P43588 SNF7YLR025W 723 nt8.44□□□□□ -1.06
RPN11P43588 SMX3YPR182W 261 nt8.44□□□□□ -1.06
RPN11P43588 YAL045CYAL045C 309 nt8.43□□□□□ -1.06
RPN11P43588 RPL43AYPR043W 279 nt8.43□□□□□ -1.06
RPN11P43588 MRPS12YNR036C 462 nt8.42□□□□□ -1.06
RPN11P43588 YBR056C-BYBR056C-B 159 nt8.42□□□□□ -1.06
RPN11P43588 LEO1YOR123C 1395 nt8.42□□□□□ -1.06
RPN11P43588 BSP1YPR171W 1731 nt8.41□□□□□ -1.06
RPN11P43588 PGI1YBR196C 1665 nt8.41□□□□□ -1.06
RPN11P43588 FTH1YBR207W 1398 nt8.41□□□□□ -1.06
RPN11P43588 SKG1YKR100C 1068 nt8.41□□□□□ -1.06
RPN11P43588 YPR196WYPR196W 1413 nt8.4□□□□□ -1.06
RPN11P43588 FRA1YLL029W 2250 nt8.4□□□□□ -1.06
RPN11P43588 PPH22YDL188C 1134 nt8.4□□□□□ -1.06
RPN11P43588 PSD1YNL169C 1503 nt8.39□□□□□ -1.07
RPN11P43588 TIM22YDL217C 624 nt8.39□□□□□ -1.07
RPN11P43588 CYT1YOR065W 930 nt8.39□□□□□ -1.07
RPN11P43588 MRPS28YDR337W 861 nt8.38□□□□□ -1.07
RPN11P43588 REC107YJR021C 945 nt8.38□□□□□ -1.07
RPN11P43588 SGF29YCL010C 780 nt8.38□□□□□ -1.07
RPN11P43588 SEC62YPL094C 825 nt8.37□□□□□ -1.07
RPN11P43588 CDC7YDL017W 1524 nt8.37□□□□□ -1.07
RPN11P43588 YMR279CYMR279C 1623 nt8.36□□□□□ -1.07
RPN11P43588 VPS24YKL041W 675 nt8.36□□□□□ -1.07
RPN11P43588 MRPL23YOR150W 492 nt8.36□□□□□ -1.07
RPN11P43588 AMN1YBR158W 1650 nt8.36□□□□□ -1.07
RPN11P43588 NBA1YOL070C 1506 nt8.35□□□□□ -1.07
RPN11P43588 ERG1YGR175C 1491 nt8.35□□□□□ -1.07
Retrieved 100 of 7,029 protein–RNA pairs in 29.9 ms