Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
TPM1P09493 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
TPM1P09493 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
TPM1P09493 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
TPM1P09493 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
TPM1P09493 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC27.25■■□□□ 1.95
TPM1P09493 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
TPM1P09493 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
TPM1P09493 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC27.24■■□□□ 1.95
TPM1P09493 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC27.24■■□□□ 1.95
TPM1P09493 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
TPM1P09493 LINC00273-201ENST00000539813 1452 ntBASIC27.24■■□□□ 1.95
TPM1P09493 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC27.23■■□□□ 1.95
TPM1P09493 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
TPM1P09493 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC27.22■■□□□ 1.95
TPM1P09493 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
TPM1P09493 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
TPM1P09493 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
TPM1P09493 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
TPM1P09493 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
TPM1P09493 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
TPM1P09493 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.95
TPM1P09493 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC27.2■■□□□ 1.94
TPM1P09493 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
TPM1P09493 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
TPM1P09493 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
TPM1P09493 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC27.19■■□□□ 1.94
TPM1P09493 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
TPM1P09493 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
TPM1P09493 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
TPM1P09493 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
TPM1P09493 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC27.18■■□□□ 1.94
TPM1P09493 HNRNPLP2-201ENST00000568980 1570 ntBASIC27.18■■□□□ 1.94
TPM1P09493 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC27.18■■□□□ 1.94
TPM1P09493 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
TPM1P09493 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
TPM1P09493 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
TPM1P09493 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
TPM1P09493 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC27.17■■□□□ 1.94
TPM1P09493 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
TPM1P09493 SNAI3-AS1-204ENST00000567997 2048 ntBASIC27.17■■□□□ 1.94
TPM1P09493 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
TPM1P09493 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.94
TPM1P09493 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC27.17■■□□□ 1.94
TPM1P09493 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC27.17■■□□□ 1.94
TPM1P09493 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
TPM1P09493 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
TPM1P09493 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
TPM1P09493 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
TPM1P09493 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
TPM1P09493 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
TPM1P09493 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
TPM1P09493 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
TPM1P09493 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC27.14■■□□□ 1.94
TPM1P09493 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC27.14■■□□□ 1.93
TPM1P09493 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC27.13■■□□□ 1.93
TPM1P09493 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
TPM1P09493 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC27.13■■□□□ 1.93
TPM1P09493 SUZ12P1-203ENST00000578195 985 ntBASIC27.13■■□□□ 1.93
TPM1P09493 MIR6090-201ENST00000622481 60 ntBASIC27.13■■□□□ 1.93
TPM1P09493 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC27.12■■□□□ 1.93
TPM1P09493 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC27.12■■□□□ 1.93
TPM1P09493 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC27.12■■□□□ 1.93
TPM1P09493 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC27.12■■□□□ 1.93
TPM1P09493 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
TPM1P09493 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
TPM1P09493 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC27.11■■□□□ 1.93
TPM1P09493 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
TPM1P09493 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC27.1■■□□□ 1.93
TPM1P09493 AP004609.3-201ENST00000610705 1884 ntBASIC27.1■■□□□ 1.93
TPM1P09493 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
TPM1P09493 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
TPM1P09493 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
TPM1P09493 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC27.09■■□□□ 1.93
TPM1P09493 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC27.09■■□□□ 1.93
TPM1P09493 AC092803.2-201ENST00000564287 1899 ntBASIC27.08■■□□□ 1.93
TPM1P09493 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
TPM1P09493 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
TPM1P09493 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
TPM1P09493 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
TPM1P09493 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
TPM1P09493 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
TPM1P09493 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC27.06■■□□□ 1.92
TPM1P09493 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.06■■□□□ 1.92
TPM1P09493 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
TPM1P09493 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
TPM1P09493 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
TPM1P09493 DUSP8P4-201ENST00000399538 1761 ntBASIC27.06■■□□□ 1.92
TPM1P09493 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.06■■□□□ 1.92
TPM1P09493 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.06■■□□□ 1.92
TPM1P09493 AC020928.2-201ENST00000588717 2197 ntBASIC27.05■■□□□ 1.92
TPM1P09493 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC27.05■■□□□ 1.92
TPM1P09493 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
TPM1P09493 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC27.05■■□□□ 1.92
TPM1P09493 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
TPM1P09493 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
TPM1P09493 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
TPM1P09493 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
TPM1P09493 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC27.04■■□□□ 1.92
TPM1P09493 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC27.04■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms