Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
CACNA1FO60840 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
CACNA1FO60840 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.71
CACNA1FO60840 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.71
CACNA1FO60840 GPX1-201ENST00000419349 1106 ntBASIC31.95■■■□□ 2.71
CACNA1FO60840 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.95■■■□□ 2.7
CACNA1FO60840 AL157400.5-201ENST00000507624 621 ntBASIC31.94■■■□□ 2.7
CACNA1FO60840 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.94■■■□□ 2.7
CACNA1FO60840 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.94■■■□□ 2.7
CACNA1FO60840 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CACNA1FO60840 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CACNA1FO60840 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC31.94■■■□□ 2.7
CACNA1FO60840 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC31.93■■■□□ 2.7
CACNA1FO60840 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CACNA1FO60840 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.93■■■□□ 2.7
CACNA1FO60840 WHAMMP3-201ENST00000611636 1609 ntBASIC31.93■■■□□ 2.7
CACNA1FO60840 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CACNA1FO60840 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CACNA1FO60840 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.92■■■□□ 2.7
CACNA1FO60840 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC31.92■■■□□ 2.7
CACNA1FO60840 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CACNA1FO60840 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CACNA1FO60840 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC31.91■■■□□ 2.7
CACNA1FO60840 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
CACNA1FO60840 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CACNA1FO60840 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CACNA1FO60840 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC31.9■■■□□ 2.7
CACNA1FO60840 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.9■■■□□ 2.7
CACNA1FO60840 AC142086.6-201ENST00000621154 1765 ntBASIC31.9■■■□□ 2.7
CACNA1FO60840 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC31.9■■■□□ 2.7
CACNA1FO60840 BX255925.1-201ENST00000566954 1854 ntBASIC31.89■■■□□ 2.7
CACNA1FO60840 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
CACNA1FO60840 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CACNA1FO60840 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
CACNA1FO60840 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC31.89■■■□□ 2.69
CACNA1FO60840 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC31.88■■■□□ 2.69
CACNA1FO60840 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
CACNA1FO60840 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CACNA1FO60840 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC31.88■■■□□ 2.69
CACNA1FO60840 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CACNA1FO60840 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
CACNA1FO60840 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
CACNA1FO60840 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.87■■■□□ 2.69
CACNA1FO60840 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.87■■■□□ 2.69
CACNA1FO60840 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.86■■■□□ 2.69
CACNA1FO60840 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CACNA1FO60840 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.86■■■□□ 2.69
CACNA1FO60840 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CACNA1FO60840 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.84■■■□□ 2.69
CACNA1FO60840 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CACNA1FO60840 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.83■■■□□ 2.69
CACNA1FO60840 CEP120-209ENST00000515110 606 ntTSL 3 BASIC31.83■■■□□ 2.69
CACNA1FO60840 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CACNA1FO60840 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC31.83■■■□□ 2.69
CACNA1FO60840 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC31.82■■■□□ 2.68
CACNA1FO60840 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
CACNA1FO60840 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
CACNA1FO60840 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC31.82■■■□□ 2.68
CACNA1FO60840 AC025884.2-201ENST00000553429 711 ntBASIC31.81■■■□□ 2.68
CACNA1FO60840 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
CACNA1FO60840 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.8■■■□□ 2.68
CACNA1FO60840 AC022413.1-201ENST00000624602 984 ntBASIC31.79■■■□□ 2.68
CACNA1FO60840 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.79■■■□□ 2.68
CACNA1FO60840 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
CACNA1FO60840 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC31.77■■■□□ 2.68
CACNA1FO60840 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
CACNA1FO60840 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
CACNA1FO60840 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
CACNA1FO60840 AC126177.7-201ENST00000547904 679 ntBASIC31.77■■■□□ 2.68
CACNA1FO60840 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC31.77■■■□□ 2.68
CACNA1FO60840 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
CACNA1FO60840 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.68
CACNA1FO60840 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC31.76■■■□□ 2.67
CACNA1FO60840 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CACNA1FO60840 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CACNA1FO60840 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CACNA1FO60840 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC31.74■■■□□ 2.67
CACNA1FO60840 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.74■■■□□ 2.67
CACNA1FO60840 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
CACNA1FO60840 RARRES2P2-201ENST00000394842 485 ntBASIC31.74■■■□□ 2.67
CACNA1FO60840 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC31.73■■■□□ 2.67
CACNA1FO60840 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CACNA1FO60840 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC31.73■■■□□ 2.67
CACNA1FO60840 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CACNA1FO60840 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.72■■■□□ 2.67
CACNA1FO60840 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CACNA1FO60840 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.72■■■□□ 2.67
CACNA1FO60840 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CACNA1FO60840 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CACNA1FO60840 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC31.7■■■□□ 2.67
CACNA1FO60840 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CACNA1FO60840 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CACNA1FO60840 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC31.69■■■□□ 2.66
CACNA1FO60840 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
CACNA1FO60840 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.69■■■□□ 2.66
CACNA1FO60840 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC31.69■■■□□ 2.66
CACNA1FO60840 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
CACNA1FO60840 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.67■■■□□ 2.66
CACNA1FO60840 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
CACNA1FO60840 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms