Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.89■■□□□ 1.1
SGCEO43556 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
SGCEO43556 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SGCEO43556 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SGCEO43556 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC21.88■■□□□ 1.09
SGCEO43556 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SGCEO43556 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
SGCEO43556 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SGCEO43556 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
SGCEO43556 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.87■■□□□ 1.09
SGCEO43556 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SGCEO43556 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.87■■□□□ 1.09
SGCEO43556 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.87■■□□□ 1.09
SGCEO43556 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SGCEO43556 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
SGCEO43556 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SGCEO43556 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SGCEO43556 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SGCEO43556 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SGCEO43556 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SGCEO43556 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SGCEO43556 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SGCEO43556 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SGCEO43556 AC008813.1-201ENST00000536597 885 ntBASIC21.85■■□□□ 1.09
SGCEO43556 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.85■■□□□ 1.09
SGCEO43556 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.85■■□□□ 1.09
SGCEO43556 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.85■■□□□ 1.09
SGCEO43556 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SGCEO43556 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SGCEO43556 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SGCEO43556 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
SGCEO43556 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SGCEO43556 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SGCEO43556 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SGCEO43556 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SGCEO43556 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SGCEO43556 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SGCEO43556 CR559946.2-201ENST00000623684 991 ntBASIC21.83■■□□□ 1.09
SGCEO43556 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SGCEO43556 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SGCEO43556 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
SGCEO43556 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
SGCEO43556 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SGCEO43556 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SGCEO43556 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SGCEO43556 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SGCEO43556 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.82■■□□□ 1.08
SGCEO43556 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SGCEO43556 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.81■■□□□ 1.08
SGCEO43556 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SGCEO43556 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
SGCEO43556 MIR7108-201ENST00000614319 87 ntBASIC21.8■■□□□ 1.08
SGCEO43556 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SGCEO43556 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SGCEO43556 MIR3648-2-201ENST00000581792 180 ntBASIC21.79■■□□□ 1.08
SGCEO43556 MIR3648-1-201ENST00000615959 180 ntBASIC21.79■■□□□ 1.08
SGCEO43556 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.79■■□□□ 1.08
SGCEO43556 GDI1-215ENST00000630693 786 ntTSL 4 BASIC21.79■■□□□ 1.08
SGCEO43556 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
SGCEO43556 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SGCEO43556 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.78■■□□□ 1.08
SGCEO43556 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.78■■□□□ 1.08
SGCEO43556 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SGCEO43556 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.78■■□□□ 1.08
SGCEO43556 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.78■■□□□ 1.08
SGCEO43556 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
SGCEO43556 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
SGCEO43556 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
SGCEO43556 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SGCEO43556 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
SGCEO43556 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SGCEO43556 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.76■■□□□ 1.07
SGCEO43556 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SGCEO43556 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SGCEO43556 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SGCEO43556 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.76■■□□□ 1.07
SGCEO43556 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
SGCEO43556 AC148477.6-201ENST00000623746 465 ntBASIC21.75■■□□□ 1.07
SGCEO43556 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
SGCEO43556 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SGCEO43556 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SGCEO43556 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SGCEO43556 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SGCEO43556 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SGCEO43556 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.74■■□□□ 1.07
SGCEO43556 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SGCEO43556 AC016575.1-201ENST00000607026 382 ntBASIC21.74■■□□□ 1.07
SGCEO43556 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SGCEO43556 MIR219A2-201ENST00000608502 1504 ntBASIC21.74■■□□□ 1.07
SGCEO43556 WHAMMP3-201ENST00000611636 1609 ntBASIC21.73■■□□□ 1.07
SGCEO43556 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.73■■□□□ 1.07
SGCEO43556 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
SGCEO43556 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SGCEO43556 HLA-V-202ENST00000446817 847 ntBASIC21.73■■□□□ 1.07
SGCEO43556 AL449106.1-201ENST00000608517 1980 ntBASIC21.73■■□□□ 1.07
SGCEO43556 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
SGCEO43556 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SGCEO43556 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SGCEO43556 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SGCEO43556 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms