Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CPSF4LA6NMK7 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CPSF4LA6NMK7 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CPSF4LA6NMK7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
CPSF4LA6NMK7 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CPSF4LA6NMK7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
CPSF4LA6NMK7 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CPSF4LA6NMK7 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
CPSF4LA6NMK7 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.26
CPSF4LA6NMK7 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CPSF4LA6NMK7 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC22.89■■□□□ 1.25
CPSF4LA6NMK7 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CPSF4LA6NMK7 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CPSF4LA6NMK7 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CPSF4LA6NMK7 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.89■■□□□ 1.25
CPSF4LA6NMK7 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
CPSF4LA6NMK7 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
CPSF4LA6NMK7 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.88■■□□□ 1.25
CPSF4LA6NMK7 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC22.88■■□□□ 1.25
CPSF4LA6NMK7 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CPSF4LA6NMK7 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CPSF4LA6NMK7 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
CPSF4LA6NMK7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
CPSF4LA6NMK7 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
CPSF4LA6NMK7 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
CPSF4LA6NMK7 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CPSF4LA6NMK7 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CPSF4LA6NMK7 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CPSF4LA6NMK7 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC22.86■■□□□ 1.25
CPSF4LA6NMK7 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC22.86■■□□□ 1.25
CPSF4LA6NMK7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC22.85■■□□□ 1.25
CPSF4LA6NMK7 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CPSF4LA6NMK7 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CPSF4LA6NMK7 AL449106.1-201ENST00000608517 1980 ntBASIC22.84■■□□□ 1.25
CPSF4LA6NMK7 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC22.84■■□□□ 1.25
CPSF4LA6NMK7 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC22.84■■□□□ 1.25
CPSF4LA6NMK7 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.83■■□□□ 1.25
CPSF4LA6NMK7 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC22.83■■□□□ 1.25
CPSF4LA6NMK7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CPSF4LA6NMK7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CPSF4LA6NMK7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC22.81■■□□□ 1.24
CPSF4LA6NMK7 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.81■■□□□ 1.24
CPSF4LA6NMK7 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
CPSF4LA6NMK7 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.81■■□□□ 1.24
CPSF4LA6NMK7 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.81■■□□□ 1.24
CPSF4LA6NMK7 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.81■■□□□ 1.24
CPSF4LA6NMK7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC22.81■■□□□ 1.24
CPSF4LA6NMK7 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.81■■□□□ 1.24
CPSF4LA6NMK7 AC091060.1-201ENST00000623524 1766 ntBASIC22.81■■□□□ 1.24
CPSF4LA6NMK7 AP004609.3-201ENST00000610705 1884 ntBASIC22.8■■□□□ 1.24
CPSF4LA6NMK7 RPS2P35-201ENST00000443417 897 ntBASIC22.8■■□□□ 1.24
CPSF4LA6NMK7 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.8■■□□□ 1.24
CPSF4LA6NMK7 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CPSF4LA6NMK7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CPSF4LA6NMK7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CPSF4LA6NMK7 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
CPSF4LA6NMK7 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.79■■□□□ 1.24
CPSF4LA6NMK7 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CPSF4LA6NMK7 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CPSF4LA6NMK7 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CPSF4LA6NMK7 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CPSF4LA6NMK7 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.77■■□□□ 1.24
CPSF4LA6NMK7 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC22.77■■□□□ 1.24
CPSF4LA6NMK7 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
CPSF4LA6NMK7 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
CPSF4LA6NMK7 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CPSF4LA6NMK7 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CPSF4LA6NMK7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
CPSF4LA6NMK7 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.75■■□□□ 1.23
CPSF4LA6NMK7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC22.75■■□□□ 1.23
CPSF4LA6NMK7 HGH1-207ENST00000628266 258 ntTSL 5 BASIC22.75■■□□□ 1.23
CPSF4LA6NMK7 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
CPSF4LA6NMK7 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
CPSF4LA6NMK7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC22.74■■□□□ 1.23
CPSF4LA6NMK7 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CPSF4LA6NMK7 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC22.73■■□□□ 1.23
CPSF4LA6NMK7 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
CPSF4LA6NMK7 WHAMMP3-201ENST00000611636 1609 ntBASIC22.72■■□□□ 1.23
CPSF4LA6NMK7 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CPSF4LA6NMK7 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CPSF4LA6NMK7 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.72■■□□□ 1.23
CPSF4LA6NMK7 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CPSF4LA6NMK7 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.72■■□□□ 1.23
CPSF4LA6NMK7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CPSF4LA6NMK7 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CPSF4LA6NMK7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC22.71■■□□□ 1.23
CPSF4LA6NMK7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC22.71■■□□□ 1.23
CPSF4LA6NMK7 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CPSF4LA6NMK7 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CPSF4LA6NMK7 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.7■■□□□ 1.23
CPSF4LA6NMK7 RPS2-210ENST00000530225 765 ntTSL 2 BASIC22.7■■□□□ 1.22
CPSF4LA6NMK7 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.7■■□□□ 1.22
CPSF4LA6NMK7 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CPSF4LA6NMK7 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CPSF4LA6NMK7 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.69■■□□□ 1.22
CPSF4LA6NMK7 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CPSF4LA6NMK7 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CPSF4LA6NMK7 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.68■■□□□ 1.22
CPSF4LA6NMK7 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CPSF4LA6NMK7 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms