Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SMIM28A0A1B0GU29 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC27.06■■□□□ 1.92
SMIM28A0A1B0GU29 AC018358.1-201ENST00000631079 1402 ntBASIC27.06■■□□□ 1.92
SMIM28A0A1B0GU29 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SMIM28A0A1B0GU29 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SMIM28A0A1B0GU29 ABHD17AP5-201ENST00000580133 923 ntBASIC27.05■■□□□ 1.92
SMIM28A0A1B0GU29 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC27.05■■□□□ 1.92
SMIM28A0A1B0GU29 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SMIM28A0A1B0GU29 DRD5P2-201ENST00000421395 2012 ntBASIC27.04■■□□□ 1.92
SMIM28A0A1B0GU29 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC27.04■■□□□ 1.92
SMIM28A0A1B0GU29 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC27.03■■□□□ 1.92
SMIM28A0A1B0GU29 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC27.03■■□□□ 1.92
SMIM28A0A1B0GU29 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC27.03■■□□□ 1.92
SMIM28A0A1B0GU29 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SMIM28A0A1B0GU29 AL359258.2-201ENST00000564063 1566 ntBASIC27.02■■□□□ 1.92
SMIM28A0A1B0GU29 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SMIM28A0A1B0GU29 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SMIM28A0A1B0GU29 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC27.02■■□□□ 1.92
SMIM28A0A1B0GU29 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.91
SMIM28A0A1B0GU29 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
SMIM28A0A1B0GU29 ECEL1P2-201ENST00000461596 1295 ntBASIC27.01■■□□□ 1.91
SMIM28A0A1B0GU29 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC27.01■■□□□ 1.91
SMIM28A0A1B0GU29 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
SMIM28A0A1B0GU29 MOB2-207ENST00000614710 705 ntTSL 5 BASIC27.01■■□□□ 1.91
SMIM28A0A1B0GU29 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
SMIM28A0A1B0GU29 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC27■■□□□ 1.91
SMIM28A0A1B0GU29 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
SMIM28A0A1B0GU29 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC27■■□□□ 1.91
SMIM28A0A1B0GU29 AL157400.5-201ENST00000507624 621 ntBASIC27■■□□□ 1.91
SMIM28A0A1B0GU29 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC27■■□□□ 1.91
SMIM28A0A1B0GU29 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SMIM28A0A1B0GU29 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SMIM28A0A1B0GU29 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.99■■□□□ 1.91
SMIM28A0A1B0GU29 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.99■■□□□ 1.91
SMIM28A0A1B0GU29 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SMIM28A0A1B0GU29 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
SMIM28A0A1B0GU29 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
SMIM28A0A1B0GU29 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SMIM28A0A1B0GU29 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SMIM28A0A1B0GU29 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
SMIM28A0A1B0GU29 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SMIM28A0A1B0GU29 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SMIM28A0A1B0GU29 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
SMIM28A0A1B0GU29 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC26.96■■□□□ 1.91
SMIM28A0A1B0GU29 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.95■■□□□ 1.9
SMIM28A0A1B0GU29 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.94■■□□□ 1.9
SMIM28A0A1B0GU29 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.94■■□□□ 1.9
SMIM28A0A1B0GU29 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
SMIM28A0A1B0GU29 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SMIM28A0A1B0GU29 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SMIM28A0A1B0GU29 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
SMIM28A0A1B0GU29 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SMIM28A0A1B0GU29 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC26.93■■□□□ 1.9
SMIM28A0A1B0GU29 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC26.93■■□□□ 1.9
SMIM28A0A1B0GU29 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC26.92■■□□□ 1.9
SMIM28A0A1B0GU29 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
SMIM28A0A1B0GU29 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SMIM28A0A1B0GU29 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC26.9■■□□□ 1.9
SMIM28A0A1B0GU29 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
SMIM28A0A1B0GU29 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.89■■□□□ 1.9
SMIM28A0A1B0GU29 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC26.89■■□□□ 1.9
SMIM28A0A1B0GU29 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SMIM28A0A1B0GU29 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SMIM28A0A1B0GU29 NTF6A-201ENST00000591175 560 ntBASIC26.88■■□□□ 1.89
SMIM28A0A1B0GU29 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SMIM28A0A1B0GU29 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.88■■□□□ 1.89
SMIM28A0A1B0GU29 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.87■■□□□ 1.89
SMIM28A0A1B0GU29 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
SMIM28A0A1B0GU29 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SMIM28A0A1B0GU29 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
SMIM28A0A1B0GU29 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
SMIM28A0A1B0GU29 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.86■■□□□ 1.89
SMIM28A0A1B0GU29 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SMIM28A0A1B0GU29 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SMIM28A0A1B0GU29 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.86■■□□□ 1.89
SMIM28A0A1B0GU29 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
SMIM28A0A1B0GU29 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SMIM28A0A1B0GU29 U85056.1-201ENST00000616429 682 ntBASIC26.85■■□□□ 1.89
SMIM28A0A1B0GU29 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
SMIM28A0A1B0GU29 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SMIM28A0A1B0GU29 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SMIM28A0A1B0GU29 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.84■■□□□ 1.89
SMIM28A0A1B0GU29 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
SMIM28A0A1B0GU29 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC26.84■■□□□ 1.89
SMIM28A0A1B0GU29 SMPD5-203ENST00000639008 1464 ntBASIC26.83■■□□□ 1.89
SMIM28A0A1B0GU29 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC26.83■■□□□ 1.89
SMIM28A0A1B0GU29 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.82■■□□□ 1.88
SMIM28A0A1B0GU29 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 WHAMMP3-201ENST00000611636 1609 ntBASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 AC007029.1-201ENST00000604183 313 ntBASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC26.81■■□□□ 1.88
SMIM28A0A1B0GU29 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC26.8■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms