Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV3A0A0B4J244 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV3A0A0B4J244 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.04■□□□□ 0.8
TRAV3A0A0B4J244 AC021231.2-201ENST00000594613 730 ntBASIC20.04■□□□□ 0.8
TRAV3A0A0B4J244 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.04■□□□□ 0.8
TRAV3A0A0B4J244 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV3A0A0B4J244 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.04■□□□□ 0.8
TRAV3A0A0B4J244 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.04■□□□□ 0.8
TRAV3A0A0B4J244 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.04■□□□□ 0.8
TRAV3A0A0B4J244 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.03■□□□□ 0.8
TRAV3A0A0B4J244 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TRAV3A0A0B4J244 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV3A0A0B4J244 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV3A0A0B4J244 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.02■□□□□ 0.79
TRAV3A0A0B4J244 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
TRAV3A0A0B4J244 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV3A0A0B4J244 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.01■□□□□ 0.79
TRAV3A0A0B4J244 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.01■□□□□ 0.79
TRAV3A0A0B4J244 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.01■□□□□ 0.79
TRAV3A0A0B4J244 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV3A0A0B4J244 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
TRAV3A0A0B4J244 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV3A0A0B4J244 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20■□□□□ 0.79
TRAV3A0A0B4J244 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV3A0A0B4J244 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV3A0A0B4J244 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
TRAV3A0A0B4J244 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.99■□□□□ 0.79
TRAV3A0A0B4J244 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
TRAV3A0A0B4J244 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV3A0A0B4J244 AP004609.3-201ENST00000610705 1884 ntBASIC19.99■□□□□ 0.79
TRAV3A0A0B4J244 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV3A0A0B4J244 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.98■□□□□ 0.79
TRAV3A0A0B4J244 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC19.98■□□□□ 0.79
TRAV3A0A0B4J244 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV3A0A0B4J244 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV3A0A0B4J244 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV3A0A0B4J244 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV3A0A0B4J244 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV3A0A0B4J244 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV3A0A0B4J244 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV3A0A0B4J244 DUX4L29-201ENST00000425409 679 ntBASIC19.97■□□□□ 0.79
TRAV3A0A0B4J244 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.96■□□□□ 0.79
TRAV3A0A0B4J244 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV3A0A0B4J244 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV3A0A0B4J244 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC19.96■□□□□ 0.79
TRAV3A0A0B4J244 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV3A0A0B4J244 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV3A0A0B4J244 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV3A0A0B4J244 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV3A0A0B4J244 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV3A0A0B4J244 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV3A0A0B4J244 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV3A0A0B4J244 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV3A0A0B4J244 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.95■□□□□ 0.78
TRAV3A0A0B4J244 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV3A0A0B4J244 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV3A0A0B4J244 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAV3A0A0B4J244 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.93■□□□□ 0.78
TRAV3A0A0B4J244 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
TRAV3A0A0B4J244 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.93■□□□□ 0.78
TRAV3A0A0B4J244 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
TRAV3A0A0B4J244 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.92■□□□□ 0.78
TRAV3A0A0B4J244 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC19.92■□□□□ 0.78
TRAV3A0A0B4J244 AC135731.1-201ENST00000569415 2548 ntBASIC19.92■□□□□ 0.78
TRAV3A0A0B4J244 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC19.92■□□□□ 0.78
TRAV3A0A0B4J244 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV3A0A0B4J244 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
TRAV3A0A0B4J244 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAV3A0A0B4J244 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRAV3A0A0B4J244 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.91■□□□□ 0.78
TRAV3A0A0B4J244 AC145676.1-201ENST00000514988 2004 ntBASIC19.91■□□□□ 0.78
TRAV3A0A0B4J244 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAV3A0A0B4J244 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV3A0A0B4J244 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.9■□□□□ 0.78
TRAV3A0A0B4J244 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC19.9■□□□□ 0.78
TRAV3A0A0B4J244 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV3A0A0B4J244 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV3A0A0B4J244 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV3A0A0B4J244 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC19.89■□□□□ 0.77
TRAV3A0A0B4J244 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC19.89■□□□□ 0.77
TRAV3A0A0B4J244 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV3A0A0B4J244 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV3A0A0B4J244 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TRAV3A0A0B4J244 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV3A0A0B4J244 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV3A0A0B4J244 WHAMMP3-201ENST00000611636 1609 ntBASIC19.88■□□□□ 0.77
TRAV3A0A0B4J244 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV3A0A0B4J244 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.87■□□□□ 0.77
TRAV3A0A0B4J244 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV3A0A0B4J244 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV3A0A0B4J244 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.87■□□□□ 0.77
TRAV3A0A0B4J244 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV3A0A0B4J244 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV3A0A0B4J244 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV3A0A0B4J244 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
TRAV3A0A0B4J244 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV3A0A0B4J244 AC092803.2-201ENST00000564287 1899 ntBASIC19.86■□□□□ 0.77
TRAV3A0A0B4J244 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.86■□□□□ 0.77
TRAV3A0A0B4J244 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV3A0A0B4J244 RPS2P35-201ENST00000443417 897 ntBASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms