Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP3Q9Y6I4 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 AC090164.3-201ENST00000610780 2143 ntBASIC19.25■□□□□ 0.67
USP3Q9Y6I4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 KRT89P-201ENST00000620027 1478 ntBASIC19.25■□□□□ 0.67
USP3Q9Y6I4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP3Q9Y6I4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 AC024563.2-201ENST00000603282 481 ntBASIC19.24■□□□□ 0.67
USP3Q9Y6I4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.24■□□□□ 0.67
USP3Q9Y6I4 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 AC099343.3-201ENST00000605834 2503 ntBASIC19.23■□□□□ 0.67
USP3Q9Y6I4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.23■□□□□ 0.67
USP3Q9Y6I4 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 NEFHP1-201ENST00000412845 2629 ntBASIC19.22■□□□□ 0.67
USP3Q9Y6I4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 AL024508.2-201ENST00000607749 1894 ntBASIC19.22■□□□□ 0.67
USP3Q9Y6I4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP3Q9Y6I4 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms