Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.4■□□□□ 0.54
TREX1Q9NSU2 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.4■□□□□ 0.54
TREX1Q9NSU2 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TREX1Q9NSU2 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TREX1Q9NSU2 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TREX1Q9NSU2 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TREX1Q9NSU2 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TREX1Q9NSU2 REXO1L9P-201ENST00000604264 2108 ntBASIC18.4■□□□□ 0.54
TREX1Q9NSU2 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
TREX1Q9NSU2 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TREX1Q9NSU2 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
TREX1Q9NSU2 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TREX1Q9NSU2 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 AL096828.2-201ENST00000567259 1965 ntBASIC18.39■□□□□ 0.53
TREX1Q9NSU2 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 AC009947.2-201ENST00000444014 672 ntBASIC18.39■□□□□ 0.53
TREX1Q9NSU2 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 AC068880.1-201ENST00000507289 2297 ntBASIC18.39■□□□□ 0.53
TREX1Q9NSU2 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TREX1Q9NSU2 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 AC008764.6-201ENST00000595909 2069 ntBASIC18.38■□□□□ 0.53
TREX1Q9NSU2 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 AC138028.4-201ENST00000564984 1845 ntBASIC18.38■□□□□ 0.53
TREX1Q9NSU2 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 SEC1P-202ENST00000473944 940 ntBASIC18.38■□□□□ 0.53
TREX1Q9NSU2 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.38■□□□□ 0.53
TREX1Q9NSU2 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.37■□□□□ 0.53
TREX1Q9NSU2 AC010240.3-201ENST00000607688 395 ntBASIC18.37■□□□□ 0.53
TREX1Q9NSU2 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 LINC01568-207ENST00000641790 1380 ntBASIC18.37■□□□□ 0.53
TREX1Q9NSU2 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 LINC01126-201ENST00000623515 1646 ntBASIC18.37■□□□□ 0.53
TREX1Q9NSU2 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TREX1Q9NSU2 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
TREX1Q9NSU2 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TREX1Q9NSU2 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms