Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CHMP1AQ9HD42 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 F2R-202ENST00000505600 442 ntTSL 2 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CHMP1AQ9HD42 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 AL355802.2-201ENST00000402069 882 ntBASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 KRT17P3-201ENST00000420566 1262 ntBASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 UNC93B5-201ENST00000530315 699 ntBASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 AC104771.1-201ENST00000603335 964 ntBASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC15.88■□□□□ 0.13
CHMP1AQ9HD42 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC15.87■□□□□ 0.13
CHMP1AQ9HD42 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms