Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
AMBRA1Q9C0C7 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 AL596275.1-201ENST00000423464 877 ntBASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 AC008550.1-201ENST00000511500 884 ntBASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 PRSS44-201ENST00000515154 1146 ntBASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
AMBRA1Q9C0C7 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
AMBRA1Q9C0C7 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
AMBRA1Q9C0C7 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.27■□□□□ 0.35
AMBRA1Q9C0C7 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.27■□□□□ 0.35
AMBRA1Q9C0C7 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.27■□□□□ 0.35
AMBRA1Q9C0C7 AL645608.8-201ENST00000606034 2086 ntBASIC17.27■□□□□ 0.35
AMBRA1Q9C0C7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
AMBRA1Q9C0C7 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.27■□□□□ 0.35
AMBRA1Q9C0C7 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
AMBRA1Q9C0C7 AC093677.2-201ENST00000600169 1863 ntBASIC17.27■□□□□ 0.35
AMBRA1Q9C0C7 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 AC012618.2-201ENST00000428058 849 ntBASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 AC004980.1-204ENST00000429707 299 ntBASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 SLC25A6P5-201ENST00000435663 894 ntBASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 AC131212.4-201ENST00000623606 975 ntBASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 MYC-208ENST00000641036 567 ntBASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 KRT8P45-201ENST00000414328 1447 ntBASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 AC112777.1-201ENST00000540175 1423 ntBASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 AC138028.4-201ENST00000564984 1845 ntBASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
AMBRA1Q9C0C7 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 AC080080.1-201ENST00000625121 2420 ntBASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 AL135905.2-201ENST00000584934 1404 ntBASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 AC012317.2-201ENST00000623305 2251 ntBASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
AMBRA1Q9C0C7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms