Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM56Q9BRZ2 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.83■□□□□ 0.61
TRIM56Q9BRZ2 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.83■□□□□ 0.61
TRIM56Q9BRZ2 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM56Q9BRZ2 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM56Q9BRZ2 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM56Q9BRZ2 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 AP000692.2-201ENST00000608391 879 ntBASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM56Q9BRZ2 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 FZD10-202ENST00000539839 3282 ntBASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 LTB4R2-202ENST00000528054 3092 ntBASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM56Q9BRZ2 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms