Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 AC009947.1-201ENST00000444350 727 ntBASIC18.03■□□□□ 0.48
CFAP54Q96N23 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 AC125437.2-201ENST00000625180 2167 ntBASIC18.03■□□□□ 0.48
CFAP54Q96N23 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CFAP54Q96N23 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CFAP54Q96N23 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CFAP54Q96N23 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.02■□□□□ 0.48
CFAP54Q96N23 AC002472.2-201ENST00000442739 958 ntBASIC18.02■□□□□ 0.48
CFAP54Q96N23 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
CFAP54Q96N23 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.02■□□□□ 0.48
CFAP54Q96N23 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CFAP54Q96N23 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CFAP54Q96N23 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CFAP54Q96N23 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
CFAP54Q96N23 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CFAP54Q96N23 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CFAP54Q96N23 TSEN15P1-201ENST00000423257 515 ntBASIC18.02■□□□□ 0.48
CFAP54Q96N23 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CFAP54Q96N23 AC104417.2-201ENST00000562989 1793 ntBASIC18.02■□□□□ 0.48
CFAP54Q96N23 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.02■□□□□ 0.47
CFAP54Q96N23 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
CFAP54Q96N23 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CFAP54Q96N23 OR8S1-201ENST00000310194 1080 ntBASIC18.02■□□□□ 0.47
CFAP54Q96N23 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.02■□□□□ 0.47
CFAP54Q96N23 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.02■□□□□ 0.47
CFAP54Q96N23 OR7E14P-202ENST00000530490 1290 ntBASIC18.02■□□□□ 0.47
CFAP54Q96N23 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.02■□□□□ 0.47
CFAP54Q96N23 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.02■□□□□ 0.47
CFAP54Q96N23 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CFAP54Q96N23 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 MCCD1P1-208ENST00000445732 328 ntBASIC18.01■□□□□ 0.47
CFAP54Q96N23 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 AC092720.2-201ENST00000602388 1665 ntBASIC18.01■□□□□ 0.47
CFAP54Q96N23 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CFAP54Q96N23 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CFAP54Q96N23 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CFAP54Q96N23 AC092865.6-201ENST00000642101 219 ntBASIC18■□□□□ 0.47
CFAP54Q96N23 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18■□□□□ 0.47
CFAP54Q96N23 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CFAP54Q96N23 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18■□□□□ 0.47
CFAP54Q96N23 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18■□□□□ 0.47
CFAP54Q96N23 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18■□□□□ 0.47
CFAP54Q96N23 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18■□□□□ 0.47
CFAP54Q96N23 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CFAP54Q96N23 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC18■□□□□ 0.47
CFAP54Q96N23 KRT18P2-201ENST00000447938 1258 ntBASIC18■□□□□ 0.47
CFAP54Q96N23 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18■□□□□ 0.47
CFAP54Q96N23 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18■□□□□ 0.47
CFAP54Q96N23 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.99■□□□□ 0.47
CFAP54Q96N23 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CFAP54Q96N23 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CFAP54Q96N23 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms