Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
USF3Q68DE3 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.84■□□□□ 0.13
USF3Q68DE3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC15.84■□□□□ 0.13
USF3Q68DE3 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
USF3Q68DE3 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC15.84■□□□□ 0.13
USF3Q68DE3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
USF3Q68DE3 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
USF3Q68DE3 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
USF3Q68DE3 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
USF3Q68DE3 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
USF3Q68DE3 AC004870.1-201ENST00000315132 882 ntBASIC15.83■□□□□ 0.13
USF3Q68DE3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC15.83■□□□□ 0.13
USF3Q68DE3 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.83■□□□□ 0.13
USF3Q68DE3 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC15.83■□□□□ 0.13
USF3Q68DE3 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
USF3Q68DE3 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC15.83■□□□□ 0.13
USF3Q68DE3 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.83■□□□□ 0.13
USF3Q68DE3 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
USF3Q68DE3 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
USF3Q68DE3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC15.83■□□□□ 0.12
USF3Q68DE3 KRT18P1-202ENST00000452408 1331 ntBASIC15.83■□□□□ 0.12
USF3Q68DE3 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.83■□□□□ 0.12
USF3Q68DE3 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 TEX21P-204ENST00000641479 1693 ntBASIC15.83■□□□□ 0.12
USF3Q68DE3 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
USF3Q68DE3 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
USF3Q68DE3 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 ENSA-205ENST00000361532 792 ntTSL 2 BASIC15.83■□□□□ 0.12
USF3Q68DE3 KRT17P6-201ENST00000453795 1220 ntBASIC15.83■□□□□ 0.12
USF3Q68DE3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.83■□□□□ 0.12
USF3Q68DE3 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC15.83■□□□□ 0.12
USF3Q68DE3 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC15.83■□□□□ 0.12
USF3Q68DE3 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.83■□□□□ 0.12
USF3Q68DE3 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC15.83■□□□□ 0.12
USF3Q68DE3 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
USF3Q68DE3 AC079602.3-201ENST00000623931 403 ntBASIC15.83■□□□□ 0.12
USF3Q68DE3 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.83■□□□□ 0.12
USF3Q68DE3 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC15.83■□□□□ 0.12
USF3Q68DE3 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC15.83■□□□□ 0.12
USF3Q68DE3 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
USF3Q68DE3 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
USF3Q68DE3 AC006333.2-201ENST00000607957 2099 ntBASIC15.82■□□□□ 0.12
USF3Q68DE3 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC15.82■□□□□ 0.12
USF3Q68DE3 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC15.82■□□□□ 0.12
USF3Q68DE3 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.82■□□□□ 0.12
USF3Q68DE3 LINC00167-201ENST00000530583 1419 ntBASIC15.82■□□□□ 0.12
USF3Q68DE3 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
USF3Q68DE3 FP475955.4-201ENST00000623131 1990 ntBASIC15.82■□□□□ 0.12
USF3Q68DE3 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC15.82■□□□□ 0.12
USF3Q68DE3 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.82■□□□□ 0.12
USF3Q68DE3 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC15.82■□□□□ 0.12
USF3Q68DE3 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.82■□□□□ 0.12
USF3Q68DE3 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
USF3Q68DE3 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC15.82■□□□□ 0.12
USF3Q68DE3 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC15.82■□□□□ 0.12
USF3Q68DE3 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.82■□□□□ 0.12
USF3Q68DE3 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC15.82■□□□□ 0.12
USF3Q68DE3 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC15.82■□□□□ 0.12
USF3Q68DE3 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.82■□□□□ 0.12
USF3Q68DE3 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
USF3Q68DE3 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF3Q68DE3 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.82■□□□□ 0.12
USF3Q68DE3 TSSC2-201ENST00000450217 709 ntBASIC15.82■□□□□ 0.12
USF3Q68DE3 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
USF3Q68DE3 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.82■□□□□ 0.12
USF3Q68DE3 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.81■□□□□ 0.12
USF3Q68DE3 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.81■□□□□ 0.12
USF3Q68DE3 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF3Q68DE3 CROCCP3-202ENST00000420820 1947 ntBASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms