Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.19■□□□□ 0.66
IRX4P78413 AL441883.1-201ENST00000566170 1045 ntBASIC19.19■□□□□ 0.66
IRX4P78413 AL512604.3-201ENST00000569583 964 ntBASIC19.19■□□□□ 0.66
IRX4P78413 CLEC4GP1-201ENST00000596555 870 ntBASIC19.19■□□□□ 0.66
IRX4P78413 AL023973.1-201ENST00000624619 620 ntBASIC19.19■□□□□ 0.66
IRX4P78413 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.19■□□□□ 0.66
IRX4P78413 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
IRX4P78413 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
IRX4P78413 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
IRX4P78413 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.19■□□□□ 0.66
IRX4P78413 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
IRX4P78413 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
IRX4P78413 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
IRX4P78413 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
IRX4P78413 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
IRX4P78413 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
IRX4P78413 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
IRX4P78413 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
IRX4P78413 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.18■□□□□ 0.66
IRX4P78413 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
IRX4P78413 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
IRX4P78413 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
IRX4P78413 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.18■□□□□ 0.66
IRX4P78413 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.18■□□□□ 0.66
IRX4P78413 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.18■□□□□ 0.66
IRX4P78413 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
IRX4P78413 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.18■□□□□ 0.66
IRX4P78413 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
IRX4P78413 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.18■□□□□ 0.66
IRX4P78413 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.18■□□□□ 0.66
IRX4P78413 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
IRX4P78413 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
IRX4P78413 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.18■□□□□ 0.66
IRX4P78413 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.18■□□□□ 0.66
IRX4P78413 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
IRX4P78413 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
IRX4P78413 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
IRX4P78413 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
IRX4P78413 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
IRX4P78413 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
IRX4P78413 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
IRX4P78413 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
IRX4P78413 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
IRX4P78413 PRSS44-201ENST00000515154 1146 ntBASIC19.17■□□□□ 0.66
IRX4P78413 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.17■□□□□ 0.66
IRX4P78413 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
IRX4P78413 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
IRX4P78413 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.17■□□□□ 0.66
IRX4P78413 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.17■□□□□ 0.66
IRX4P78413 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
IRX4P78413 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
IRX4P78413 SDHAP1-207ENST00000440850 2000 ntBASIC19.17■□□□□ 0.66
IRX4P78413 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
IRX4P78413 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.17■□□□□ 0.66
IRX4P78413 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
IRX4P78413 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
IRX4P78413 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
IRX4P78413 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
IRX4P78413 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
IRX4P78413 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.16■□□□□ 0.66
IRX4P78413 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
IRX4P78413 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
IRX4P78413 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
IRX4P78413 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.16■□□□□ 0.66
IRX4P78413 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.16■□□□□ 0.66
IRX4P78413 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
IRX4P78413 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
IRX4P78413 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
IRX4P78413 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.16■□□□□ 0.66
IRX4P78413 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
IRX4P78413 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.16■□□□□ 0.66
IRX4P78413 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
IRX4P78413 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
IRX4P78413 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
IRX4P78413 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
IRX4P78413 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
IRX4P78413 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
IRX4P78413 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.15■□□□□ 0.66
IRX4P78413 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.15■□□□□ 0.66
IRX4P78413 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
IRX4P78413 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
IRX4P78413 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
IRX4P78413 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.15■□□□□ 0.66
IRX4P78413 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms